Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0114.Seq
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 38 0.006
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 37 0.013
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 37 0.013
04_01_0612 + 8036625-8036751,8036917-8037110,8037463-8038230 31 0.66
04_04_0575 - 26342697-26342885,26343030-26343165,26343279-263437... 30 1.5
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 29 2.0
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096... 28 4.6
02_05_0525 + 29764176-29764518,29765351-29765679 28 6.1
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 27 8.1
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 2 KGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSVTVVVDG 166
K E + + LD KAFD + H A+LS + G P +W+ S V+++G
Sbjct: 448 KREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNG 502
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 2 KGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSVTVVVDG 166
K + L + LD AKAFD V ++L L G P+ WI + L V++ G
Sbjct: 33 KCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHG 87
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2
Query: 2 KGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSVTVVVDG 166
K + + V LD KAFD V +L L G PE WI L V+++G
Sbjct: 1048 KCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAVLLNG 1102
>04_01_0612 + 8036625-8036751,8036917-8037110,8037463-8038230
Length = 362
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 173 SSHRLQRP*RSAHPKS*RSTCRDPRGFRKMVTSIEVPYARPCRRPS 36
+ R+++ +A P S C DP+ ++ I V Y+ CR PS
Sbjct: 18 TDQRVKKKRAAASPNSEDGYCADPKKLNALIEDIFVCYSLSCREPS 63
>04_04_0575 -
26342697-26342885,26343030-26343165,26343279-26343795,
26344286-26344381,26344933-26345011,26345329-26345712
Length = 466
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 570 LDIARNVDPKYPDTLGRLQGYPW 502
+ + N+ PK+PD +G L+ +PW
Sbjct: 266 VSLLSNLSPKHPDMMGALKQHPW 288
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 77 KLPSYGIPEGLCKWIASFLDGRSVTVVVDGDCSD 178
KLP + +C W A +L G+S + +VD +
Sbjct: 563 KLPEADDQKSMCNWAAEYLKGKSYSKLVDASLKE 596
>10_08_0858 -
21108283-21108387,21108820-21108889,21109490-21109646,
21109930-21110062,21110409-21110583,21113353-21113453,
21113620-21113706,21115871-21115931,21116114-21116178,
21116534-21117631
Length = 683
Score = 28.3 bits (60), Expect = 4.6
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 137 GRSVTVVVDGDCSDTMTINADRSTR-FGA-LPHAFHPVYQ*LLSIDGIHCYADDSTGDAR 310
G V V VD C DRS F A L H+FH L SID + D ++ R
Sbjct: 258 GAKVVVSVDRGC--------DRSDLPFAAHLFHSFHSAVYLLESIDAVGTDPDTASKIER 309
Query: 311 YIGHQSLSRSMVQERRS 361
Y+ H ++ + +V R+
Sbjct: 310 YLIHPAIEQCVVASHRA 326
>02_05_0525 + 29764176-29764518,29765351-29765679
Length = 223
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 17 AVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSVTVV 157
AV+ D+ A R RA L+ G E +C+W+A L+ R V +V
Sbjct: 65 AVTFDMRGA-GRSTGRASLTGSTEVGDVEAVCRWVADNLNPRGVLLV 110
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 17 AVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSVTVVVDGD 169
A+ LD++KA+DRV L L G + KW S +D + + GD
Sbjct: 235 ALKLDLSKAYDRVDWAFLDGVLQRMGFGDTWRKWTMSCVDICPIRGLRQGD 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,071,344
Number of Sequences: 37544
Number of extensions: 409606
Number of successful extensions: 1204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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