Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0114.Seq
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    40   0.001
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    38   0.004
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    34   0.083
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    31   0.59 
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    31   0.78 
AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +2

Query: 38  KAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSVTVVVD 163
           KAFD+V H  LL KL  +GI    C W   FL  R+ +V V+
Sbjct: 2   KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVN 43



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 186 PLTLTVPQGSVLSPTLFILYINDCCL 263
           P++  VP+GSV  P LF+++IN   L
Sbjct: 52  PISSGVPKGSVSGPFLFLIFINSLLL 77


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +2

Query: 20  VSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSVTV 154
           + LD +KAFDR+ H  LL KL S    + L  W+  FL  RS  V
Sbjct: 17  IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRV 61



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +3

Query: 192 TLTVPQGSVLSPTLFILYIND 254
           T  VPQG+VLSP LF +Y+ND
Sbjct: 74  TCGVPQGAVLSPLLFGIYVND 94


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 186 PLTLTVPQGSVLSPTLFILYINDCCLLMA 272
           P++  VPQGSV  P LFIL+IN+  + +A
Sbjct: 876 PISSGVPQGSVSGPLLFILFINNLLIDLA 904


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 201 VPQGSVLSPTLFILYIND 254
           VPQGSV+SP LF  Y+ D
Sbjct: 533 VPQGSVISPNLFTFYLKD 550


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y113G7B.12 protein.
          Length = 1042

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 20   VSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSVTVVVD 163
            +   ++ AFD+V H  L+SKL  + +   L  W    +  ++ +V V+
Sbjct: 890  IHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVN 937


>AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical
           protein C17E7.9a protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 34  REGLRQGLA*GTSIEVTILRNPR 102
           RE + +GLA GT +  T+ R PR
Sbjct: 246 RENVHEGLADGTQVTTTVFRGPR 268


>AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical
           protein C17E7.9b protein.
          Length = 257

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 34  REGLRQGLA*GTSIEVTILRNPR 102
           RE + +GLA GT +  T+ R PR
Sbjct: 218 RENVHEGLADGTQVTTTVFRGPR 240


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 164 RLQRP*RSAHPKS*RSTCRDPRGFRKMVTSIEVPYARPCRRPSRYQGSQQEPRP 3
           R +RP  +  P   R+ C  P G        + P   PC+RP   Q  Q +P+P
Sbjct: 84  RNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRP---QPPQPQPQP 134


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 164 RLQRP*RSAHPKS*RSTCRDPRGFRKMVTSIEVPYARPCRRPSRYQGSQQEPRP 3
           R +RP  +  P   R+ C  P G        + P   PC+RP   Q  Q +P+P
Sbjct: 84  RNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRP---QPPQPQPQP 134


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 164 RLQRP*RSAHPKS*RSTCRDPRGFRKMVTSIEVPYARPCRRPSRYQGSQQEPRP 3
           R +RP  +  P   R+ C  P G        + P   PC+RP   Q  Q +P+P
Sbjct: 84  RNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRP---QPPQPQPQP 134


>Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical
           protein F41E7.1 protein.
          Length = 516

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -2

Query: 337 PRETLMADISRIPRAVICIAMYA-INRQQSLIYRMKSVGES-TEPCGTVSVNGHGIRAVT 164
           PR T  AD++  P  ++    +  + +  +LI +   +    T P   + +N  G + ++
Sbjct: 411 PRATFQADLA--PTLLLMATPFPDMAKDAALILKAAILSVLITAPIFDILLNLVGSKCLS 468

Query: 163 VYNDRDAPPIQKASD 119
            YN +DAP I+K  D
Sbjct: 469 QYNPQDAPAIEKNFD 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,516,525
Number of Sequences: 27780
Number of extensions: 318830
Number of successful extensions: 882
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)