Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0114.Seq
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24740.1 68418.m02920 expressed protein                             29   1.7  
At1g59700.1 68414.m06716 glutathione S-transferase, putative sim...    28   3.9  
At1g59670.1 68414.m06711 glutathione S-transferase, putative sim...    28   3.9  
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi...    28   5.1  
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa...    28   5.1  
At4g10050.1 68417.m01643 hydrolase, alpha/beta fold family prote...    27   6.8  

>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 250 LIYRMKSVGESTEPCGTVSVNGHGIRAVTVYNDRDAPPIQKASDPLAETLGDSVRW 83
           L YR  + GE  E C  ++VN     A     ++ AP  + + DP   TL  S  W
Sbjct: 251 LSYRSAAEGEMQEACSELTVNMGATGATRSEKEQSAPEKEPSDDP---TLNKSRGW 303


>At1g59700.1 68414.m06716 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 234

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 23  SLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 142
           SL+I +  D  W+ +  S LPS+     L ++ + F+D +
Sbjct: 70  SLNIVEYIDETWNSSAPSILPSHPYDRALARFWSDFVDNK 109


>At1g59670.1 68414.m06711 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 233

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 14  LAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 142
           + VSL+I +  D  W+ +  S LPS+     L ++ + F+D +
Sbjct: 67  VCVSLNIVEYIDETWNSSGSSILPSHPYDRALARFWSVFVDDK 109


>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 521

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 368 VSEVENSXGRVSEWG-ELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQ 505
           + E     G +S  G E+    +N +   VC    KKDPF + P+ +
Sbjct: 261 LDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVE 307


>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 388

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 364 F*SSLLHHAPRETLMADISRIPRAVI 287
           F S+ LHH PR  L+   SR+ R VI
Sbjct: 2   FSSTTLHHLPRPNLLLPSSRVCRKVI 27


>At4g10050.1 68417.m01643 hydrolase, alpha/beta fold family protein
           similar to protein phosphatase methylesterase-1 [Homo
           sapiens] GI:5533003; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 350

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 279 AMQMTARG--MRDISAIRVSLGAWCKRDDQNLCLKWRTLXGES 401
           A++ + RG  +R+I + RVS+    K DD   C  +RT   E+
Sbjct: 211 AIEYSVRGGSLRNIDSARVSIPTTLKYDDSKHCYVYRTRLEET 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,986,356
Number of Sequences: 28952
Number of extensions: 308783
Number of successful extensions: 906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)