Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0113.Seq
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    36   0.005
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    33   0.020
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   2.3  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   7.1  

>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 64  TLWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDE-S 240
           TL+      N  KV          YEQI    + G     + LA+NPNG VP L D + +
Sbjct: 5   TLYSHAGGPNPWKVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVDHKNN 64

Query: 241 DLILW 255
           D  +W
Sbjct: 65  DYTIW 69


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +1

Query: 52  VSMITLWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLRD 231
           ++  TLW   +  N  KV          YE              + LA+NPNG VP L D
Sbjct: 1   MAQFTLWSHAHGPNPWKVVQALKELDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLID 60

Query: 232 -DESDLILW 255
              +D  +W
Sbjct: 61  HHNNDYTIW 69


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 336 EAEK-WMDWANQTLSNAHRGILMGLVRTPPEKRDQAAIDASCKECDALFSLLDAELGKVN 512
           EA+K W   +     N  + +   ++R   +  + A  D      DA F  +   L K+N
Sbjct: 36  EAQKEWKSTSFAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKIN 95

Query: 513 WSLA 524
           W+LA
Sbjct: 96  WTLA 99


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +1

Query: 247 ILWNQTPLS---AIWRHSTGKNACGSTHRHVVRKRK 345
           + WN  P      +W++  G   C ++ R V  KRK
Sbjct: 212 LAWNGIPSEHRPIVWKYLLGYLPCNASRREVTLKRK 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,542
Number of Sequences: 5004
Number of extensions: 48681
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)