Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0113.Seq
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 34 0.083
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 29 1.8
11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572... 29 3.1
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 3.1
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 29 3.1
11_01_0642 + 5167229-5167310,5168203-5168336,5169627-5169676,517... 28 4.1
03_02_0816 + 11487811-11488708,11488835-11489235 28 4.1
03_02_0995 - 13071930-13072007,13072708-13072999,13073096-130732... 28 5.4
03_03_0278 - 16126803-16129049 27 7.2
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 27 9.5
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 27 9.5
04_03_0899 + 20662671-20662818,20663655-20663959,20664080-206642... 27 9.5
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 27 9.5
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 27 9.5
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 33.9 bits (74), Expect = 0.083
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 52 VSMITLWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLRD 231
+S + ++GR STNV +V YE + G + + + NP G +P L+D
Sbjct: 1 MSPVKVFGRAISTNVSRVLVCLEEVGADYELVTVDFLAGEQNSPEHVERNPFGKIPALQD 60
Query: 232 DESDLILWNQTPLS 273
DL+L+ ++
Sbjct: 61 --GDLVLFESRAIA 72
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +1
Query: 67 LWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDESDL 246
++G STNV +V YE + + + + NP G VP L+D DL
Sbjct: 5 VYGLPMSTNVARVLVCLEEAGEQYEVVPIDFSIAEHKSPEHTSRNPFGQVPALQD--GDL 62
Query: 247 ILWNQTPLS 273
IL+ +S
Sbjct: 63 ILFESRAIS 71
>11_01_0694 -
5719188-5720400,5720439-5721194,5722004-5722247,
5723862-5723901
Length = 750
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 363 LPSPSIFPLPHDVPVSRSTGVFARTVPPDSGQWRLIPKNEI 241
L + +FP+ D+ +S V ++ PP++G W +I + +
Sbjct: 416 LQTQVMFPMLQDMEISDCPKVRLKSSPPNAGNWTIILSDNV 456
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 61 ITLWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDES 240
+ ++G S NV +V ++ + + FLA+NP G +P+L+D +
Sbjct: 8 LRVYGMALSANVVRVATVLNEKGLDFDLVPVDLRTAAHKQPHFLALNPFGQIPVLQDGDE 67
Query: 241 DL 246
L
Sbjct: 68 VL 69
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 376 LSVWFAQSIHFSASARRAGE-SIHRRFC 296
LS WFAQS+ A+ARRA E SI C
Sbjct: 11 LSGWFAQSLSPDAAARRAAEQSIESAKC 38
>11_01_0642 +
5167229-5167310,5168203-5168336,5169627-5169676,
5170786-5170816,5172298-5172489,5172490-5172612,
5173002-5173172
Length = 260
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 214 VPLLRDDESDLILWNQT 264
VPL++DD SD++ W T
Sbjct: 164 VPLMQDDSSDMLFWKHT 180
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/59 (38%), Positives = 29/59 (49%)
Frame = +1
Query: 313 STHRHVVRKRKNGWTGQTRRSVMLIAGFLWD*SEHHRKNAIRPPLMPVAKSATPCFPCS 489
S HRH +G Q RRSV +AG L S +HR + R L AK+A P C+
Sbjct: 6 SAHRHGASSSSSG--AQRRRSVGCMAGLLRLLSPYHRSHH-RKRL--TAKNAAPPVVCT 59
>03_02_0995 -
13071930-13072007,13072708-13072999,13073096-13073226,
13073564-13074466,13074545-13074631,13075141-13075224,
13075355-13075408,13075903-13076034,13076164-13076259,
13076508-13076777,13078711-13078800,13079942-13080008,
13080150-13080241,13080359-13080487
Length = 834
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 372 ASGLPSPSIFPLPHDVPVSRSTGVFARTV 286
+SGLPS + P+P+ + + V+A V
Sbjct: 174 SSGLPSKEVMPIPNKTIIENKSSVYAAVV 202
>03_03_0278 - 16126803-16129049
Length = 748
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 363 LPSPSIFPLPHDVPVSRSTGVFARTVPPDS 274
+P +F H+VP R +G A VP DS
Sbjct: 690 IPKEEMFRFSHEVPFYRMSGEEAPNVPKDS 719
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 354 PSIFPLPHDVPVSRSTGVFA-RTVPPDSGQW 265
P + P P D+P R T +++PP S W
Sbjct: 25 PGVIPKPIDLPSQRGTATQGDKSMPPASNAW 55
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 160 EFGI-NHDADFLAMNPNGLVPLLRDDESDLILWNQTPLSAIWRHSTGKNACGST 318
E G+ N +FL MNP G +P+L E + + + R + CGS+
Sbjct: 59 EMGVSNKTPEFLKMNPLGKIPVLETPEG-AVFESNAIARYVARLKDNSSLCGSS 111
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 255 ESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWA 362
ESNAI RY+A L S + E+WMD++
Sbjct: 90 ESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFS 125
>04_03_0899 +
20662671-20662818,20663655-20663959,20664080-20664265,
20665200-20665274,20665596-20665652
Length = 256
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 436 RPPLMPVAKSATPCFPCSMRNWEK*IGLL 522
RP ++P+ TP PC+M ++K I L+
Sbjct: 214 RPVVLPIEHWHTPLVPCNMLTFKKGITLI 242
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +1
Query: 67 LWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDESDL 246
++G STNV ++ YE + G + ++ NP G VP D DL
Sbjct: 6 VYGPAMSTNVMRILVCLEEVGAEYEVVPVDMSTGEHKRPPHISRNPFGQVPAFED--GDL 63
Query: 247 ILWNQTPLS 273
L+ +S
Sbjct: 64 TLFESRAIS 72
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 136 YEQILAGREFGINHDADFLAMNPNGLVPLLRDDESDLILWNQTPLS 273
YE + R G + + LA NP G +P+L D DL L+ ++
Sbjct: 29 YEVVPMSRSGGDHRRPEHLARNPFGEIPVLED--GDLTLYQSRAIA 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,695,227
Number of Sequences: 37544
Number of extensions: 371856
Number of successful extensions: 1212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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