Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0113.Seq
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)                    30   1.0  
SB_12594| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40)                 29   3.2  
SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31)         28   4.2  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          27   7.3  
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_12253| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +2

Query: 224  CVTTKVISFFGIKRHCPLSGGTVRAKTP-VDRLTGTSCGSGKMDGLGKPDAQ--*CSSRD 394
            C   K +    +K  C +  G+ + KT  V    GTSCG GK   + + D +   C  +D
Sbjct: 1005 CSGAKFLDQVCVKLWCEVPAGSGQCKTAQVPATDGTSCGEGKSCSISEVDFRNYQCQEKD 1064

Query: 395  S 397
            S
Sbjct: 1065 S 1065


>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
          Length = 486

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +1

Query: 229 DDESDLILWNQTPLSAIWRHSTGKNACGSTHRHVVRKRKNGWTGQ 363
           +DE D I W Q      W H       GS  R   R R   W+ Q
Sbjct: 264 EDERDRIRWRQLEKERRWPHEQRSRRDGSHSRSRSRSRGRSWSRQ 308


>SB_12594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 223 LRDDESDLILWNQTPLSAIWRHSTGKNACGSTHRHVVRKRKNGWTGQTRR 372
           + D+E  LILW Q    A+   +  ++   S  R + + RK    G TR+
Sbjct: 24  ISDEEFRLILWEQERYYALKAATRARHGLASRMRSMKKSRKRALPGNTRK 73


>SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40)
          Length = 553

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 367 WFAQSIHFSASARRAGESIHRRFC 296
           WFAQS+  S   +RA  ++ RR C
Sbjct: 48  WFAQSLFLSGQYQRASHALKRRGC 71


>SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31)
          Length = 414

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 360 PSPSIFPLPHDVPVSRSTGVFARTVPPD 277
           P+P++ P P D P S S  V+    PPD
Sbjct: 16  PTPAVAPPPRDTP-STSNAVYKAPFPPD 42


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 243 SHSLESNAI--VRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNAH 386
           SH L+S A   V  ++AQ G    W+D P   + AE     +  TLSN +
Sbjct: 320 SHPLDSQASRSVTPVSAQ-GSDNFWLDQPGGSSNAELIAQLSEVTLSNGY 368


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 172 NHDADFLAMNPNGLVPLL 225
           N   ++LA+NPNGLVP++
Sbjct: 296 NKTPEWLAINPNGLVPVI 313


>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +2

Query: 272  PLSGGTVRAKTPVD--RLTGTSCGSGKMDGLGKPDAQ*CSSRDSYGISQNTTGKTRSGRH 445
            PLSG        VD  RLTG S  + + + +G  + +  +      I+ N   K      
Sbjct: 1096 PLSGQQCETFESVDGIRLTGLSFSTLQAENIGICNDKCDTDEKCKSINYNKLSKK----- 1150

Query: 446  *CQLQRVRRPVFPARCGTGKSKLVS 520
             C+L +  +  FP+R    KS + S
Sbjct: 1151 -CELNKTNKDAFPSRVEQAKSAIFS 1174


>SB_12253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 235 ESDLILWNQT---PLSAIWRHSTGKNACGSTHRHVVRKRKN 348
           E D ++W +     LS++WR    +N+ G T R   + R+N
Sbjct: 10  EGDGVIWKKKYAPSLSSLWRMVNPRNSSGRTRRPFSKIREN 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,467,194
Number of Sequences: 59808
Number of extensions: 403431
Number of successful extensions: 1221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)