Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0113.Seq
         (534 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB076384-1|BAB82982.1|  376|Homo sapiens X box-binding protein s...    32   1.5  
BC146776-1|AAI46777.1| 1542|Homo sapiens SET binding protein 1 p...    29   7.8  
AB022660-1|BAA82444.1| 1542|Homo sapiens SET-binding protein (SE...    29   7.8  
AB007897-1|BAA24826.2| 1605|Homo sapiens KIAA0437 protein.             29   7.8  

>AB076384-1|BAB82982.1|  376|Homo sapiens X box-binding protein
           spliced form protein.
          Length = 376

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 297 QKRLWIDSPARRAEAEKWMDWANQTLSNAHRGILMGLVRTPPE--KRDQAAIDASCKECD 470
           ++RL +D+     EAE   +       +A      G V TPPE    D   ID+S  E D
Sbjct: 134 RQRLGMDALVAEEEAEAKGNEVRPVAGSAESAAGAGPVVTPPEHLPMDSGGIDSSDSESD 193

Query: 471 ALFSLLD 491
            L  +LD
Sbjct: 194 ILLGILD 200


>BC146776-1|AAI46777.1| 1542|Homo sapiens SET binding protein 1
           protein.
          Length = 1542

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 372 LSNAHRGILMGLVRTPPEKRDQAAIDASCKECDALFSLLDAELG 503
           LSN ++ +L+G V   P      A  +S  EC+ L  L+D + G
Sbjct: 223 LSNNNKDLLLGGVAPSPSSHSSPAPPSSSAECNGLQPLVDQDGG 266


>AB022660-1|BAA82444.1| 1542|Homo sapiens SET-binding protein (SEB)
           protein.
          Length = 1542

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 372 LSNAHRGILMGLVRTPPEKRDQAAIDASCKECDALFSLLDAELG 503
           LSN ++ +L+G V   P      A  +S  EC+ L  L+D + G
Sbjct: 223 LSNNNKDLLLGGVAPSPSSHSSPAPPSSSAECNGLQPLVDQDGG 266


>AB007897-1|BAA24826.2| 1605|Homo sapiens KIAA0437 protein.
          Length = 1605

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 372 LSNAHRGILMGLVRTPPEKRDQAAIDASCKECDALFSLLDAELG 503
           LSN ++ +L+G V   P      A  +S  EC+ L  L+D + G
Sbjct: 286 LSNNNKDLLLGGVAPSPSSHSSPAPPSSSAECNGLQPLVDQDGG 329


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,250,900
Number of Sequences: 237096
Number of extensions: 1894848
Number of successful extensions: 8486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8486
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)