Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0113.Seq
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    34   0.074
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    27   8.5  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    27   8.5  
AF039042-6|AAC48244.1|  219|Caenorhabditis elegans Glutathione s...    27   8.5  

>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 33.9 bits (74), Expect = 0.074
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +3

Query: 294 GQKRLWIDSPARRAEAEKWMDWANQTLSNAHRGILMGLVRTPPEKRDQAAIDASCKECDA 473
           GQK++ +D    + E E+ +    QT +  HRG L+ L+ TP      A +  S   CD 
Sbjct: 72  GQKQM-LDK--LQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDG 128

Query: 474 LFSLLDAELG 503
           +  L+ A  G
Sbjct: 129 ILLLVAANQG 138


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 297 QKRLWIDSPARRAEAEKWMD 356
           +K +W  S   +AE E+WMD
Sbjct: 646 EKNIWTASQIMKAEMERWMD 665


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 297 QKRLWIDSPARRAEAEKWMD 356
           +K +W  S   +AE E+WMD
Sbjct: 659 EKNIWTASQIMKAEMERWMD 678


>AF039042-6|AAC48244.1|  219|Caenorhabditis elegans Glutathione
           s-transferase protein21 protein.
          Length = 219

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 255 ESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNAHRGILMGLVRTPPEKRD 434
           +S AI RYLA Q+G       +P   A+A+ ++D   Q  + + R  +   ++  PE+  
Sbjct: 72  QSAAINRYLARQFGFAG---KNPIEEAQADSYIDQC-QEYNTSFRACMYATLQGKPEEEV 127

Query: 435 Q 437
           Q
Sbjct: 128 Q 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,417,119
Number of Sequences: 27780
Number of extensions: 285592
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)