Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0113.Seq
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 300 FARTVPPDSGQ 268
           FARTVPPD+ Q
Sbjct: 115 FARTVPPDTFQ 125


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 391 GFLWD*SEHHRKNAIRPPLMPVAKSAT 471
           GF W   E  R   + PP+MP  ++AT
Sbjct: 628 GFNW---EGLRARTLEPPIMPRVQNAT 651


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 300 FARTVPPDSGQ 268
           FARTVPPD+ Q
Sbjct: 205 FARTVPPDTFQ 215


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 329 SCGSGKMDGLGKPD 370
           +CG+G +DGLG  D
Sbjct: 210 ACGAGFIDGLGLGD 223


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 339 LPHDVPVSRSTG 304
           +PHD+ V+ STG
Sbjct: 174 MPHDIAVNASTG 185


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 339 LPHDVPVSRSTG 304
           +PHDV V+ +TG
Sbjct: 170 IPHDVAVNATTG 181


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 312 STGVFARTVPPDSGQ 268
           S  V   T+PPDSG+
Sbjct: 247 SMAVLGFTLPPDSGE 261


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 133 PYEQILAGREFGINH 177
           PY   + G+ FG NH
Sbjct: 231 PYTCDICGKSFGYNH 245


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 339 LPHDVPVSRSTG 304
           +PHDV V+ +TG
Sbjct: 170 IPHDVAVNATTG 181


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 339 LPHDVPVSRSTG 304
           +PHDV V+ +TG
Sbjct: 170 IPHDVAVNATTG 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,967
Number of Sequences: 438
Number of extensions: 3547
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)