Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0113.Seq
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02950.2 68414.m00263 glutathione S-transferase, putative sim... 32 0.28
At1g02950.1 68414.m00262 glutathione S-transferase, putative sim... 31 0.37
At1g02940.1 68414.m00261 glutathione S-transferase, putative sim... 31 0.64
At3g62760.1 68416.m07050 glutathione S-transferase, putative Glu... 30 0.84
At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ... 30 1.1
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 29 1.5
At5g20980.1 68418.m02494 5-methyltetrahydropteroyltriglutamate--... 28 4.5
At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident... 28 4.5
At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein ... 28 4.5
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote... 27 5.9
At2g02390.2 68415.m00177 glutathione S-transferase zeta 1 (GSTZ1... 27 5.9
At2g02390.1 68415.m00178 glutathione S-transferase zeta 1 (GSTZ1... 27 5.9
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa... 27 5.9
At2g02380.1 68415.m00176 glutathione S-transferase, putative sim... 27 7.9
At1g58220.1 68414.m06612 myb family transcription factor contain... 27 7.9
>At1g02950.2 68414.m00263 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 245
Score = 31.9 bits (69), Expect = 0.28
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 40 VGKGVSMITLWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVP 219
V K V+ + G STN ++V YE I + G + FL++NP G VP
Sbjct: 20 VKKLVAGYKVHGDPFSTNTRRVLAVLHEKRLSYEPITVKLQTGEHKTEPFLSLNPFGQVP 79
Query: 220 LLRD 231
+ D
Sbjct: 80 VFED 83
>At1g02950.1 68414.m00262 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 243
Score = 31.5 bits (68), Expect = 0.37
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 85 STNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLRD 231
STN ++V YE I + G + FL++NP G VP+ D
Sbjct: 33 STNTRRVLAVLHEKRLSYEPITVKLQTGEHKTEPFLSLNPFGQVPVFED 81
>At1g02940.1 68414.m00261 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]
Length = 256
Score = 30.7 bits (66), Expect = 0.64
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 67 LWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLRD 231
++G STN ++V Y+ I G FLA+NP G VP+ D
Sbjct: 41 IYGYPYSTNTRRVLAVLHEKGLSYDPITVNLIAGDQKKPSFLAINPFGQVPVFLD 95
>At3g62760.1 68416.m07050 glutathione S-transferase, putative
Glutathione transferase III(b) - Zea mays, EMBL:AJ010296
Length = 219
Score = 30.3 bits (65), Expect = 0.84
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 67 LWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDA-DFLAMNPNGLVPLLRDDESD 243
L+G S V +V +E + F +H FL+MNP G VP L+DD D
Sbjct: 5 LYGDEMSACVARVLLCLHEKNTEFELVPVNL-FACHHKLPSFLSMNPFGKVPALQDD--D 61
Query: 244 LILWNQTPLSA 276
L L+ ++A
Sbjct: 62 LTLFESRAITA 72
>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative similar to elongation factor 1B
gamma GI:3868758 from [Oryza sativa]
Length = 413
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 255 ESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWAN 365
ESNAI RY++ + G L S A E+W+D+++
Sbjct: 66 ESNAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSS 102
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 255 ESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWAN 365
ESNAI RY++ G L S A+ E+W+D+++
Sbjct: 66 ESNAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSS 102
>At5g20980.1 68418.m02494
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 812
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 436 RPPLMPVAKSATPCFPCS 489
RPP +P SATP PC+
Sbjct: 18 RPPSLPPPSSATPSLPCA 35
>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
identical to COP1-Interacting Protein 7 (CIP7)
GI:3327868 from [Arabidopsis thaliana]
Length = 1058
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +2
Query: 308 VDRLTGTSCGSGKMDGLGKPDAQ*CSSRDSYGISQNTTGKTRSGRH*CQLQRVRRPVFPA 487
+D +T T +G+ GK + S GIS+ K+R+ + +RP + +
Sbjct: 698 IDLITATKASAGEQTLDGK-------EKKSRGISKGKDAKSRASSRPDPASKAKRPAWGS 750
Query: 488 RCGTGKSK 511
R KSK
Sbjct: 751 RAAVSKSK 758
>At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 521
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 360 PSPSIFPLPHDVPVSRS-TGVFARTVPPDSGQWRLIPKNEIT 238
P P I P H V VSRS T R PP + P IT
Sbjct: 282 PQPVIIPQEHSVAVSRSFTNPERRVSPPKPVNGSISPPKPIT 323
>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase ERECTA,
Arabidopsis thaliana, EMBL:AC004484
Length = 1048
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 257 FQRMRSLSSSRNNGTSPLGFIARKSAS*FIPNSRP 153
F +RSL+ SRNN P+ F +++ + NS P
Sbjct: 434 FASLRSLNLSRNNLEGPIPFRGSRASELLVLNSYP 468
>At2g02390.2 68415.m00177 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 191
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +1
Query: 49 GVSMITLWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLR 228
G + L+ S+ +V YE I G D+DF +NP G VP L
Sbjct: 5 GEEKLKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALV 64
Query: 229 DDE 237
D +
Sbjct: 65 DGD 67
>At2g02390.1 68415.m00178 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 221
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +1
Query: 49 GVSMITLWGRNNSTNVKKVXXXXXXXXXPYEQILAGREFGINHDADFLAMNPNGLVPLLR 228
G + L+ S+ +V YE I G D+DF +NP G VP L
Sbjct: 5 GEEKLKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALV 64
Query: 229 DDE 237
D +
Sbjct: 65 DGD 67
>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 645
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 184 DFLAMNPNGLVPLLRDDESDLILWNQTPLSAIWRHSTGKNACGST-HRHVVRKRKN 348
+F + NPN + + WN +P++A+ S+ + HR+ R+R N
Sbjct: 298 NFASQNPNAPATHMPPVSRNTFQWNTSPVAAVISSSSATPVDRNVIHRNATRQRSN 353
>At2g02380.1 68415.m00176 glutathione S-transferase, putative
similar to gi:167970 gb:AAA72320 gb:AY052332
Length = 223
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 136 YEQILAGREFGINHDADFLAMNPNGLVPLLRDDE 237
YE I G D+DF +NP G VP L D +
Sbjct: 37 YEYIPVNLLKGDQSDSDFKKINPMGTVPALVDGD 70
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 357 SPSIFPLPHDVPVSRSTGVFARTVPPDSGQWRLIP 253
SP PL H P+S+ + + + +VPP RL+P
Sbjct: 614 SPFTKPL-HMAPLSKGSTIQSNSVPPSFASSRLVP 647
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,338
Number of Sequences: 28952
Number of extensions: 274343
Number of successful extensions: 881
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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