Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0112.Seq
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    28   6.8  
AF016443-14|AAC24274.1|  217|Caenorhabditis elegans Hypothetical...    27   9.0  

>U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical
           protein T01B11.1 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -2

Query: 320 YYSEEYCQQLFSLRNELDASTYLV*FWVN*FIALLKFVII 201
           YY+ + C ++FSLRN    S YL    +  FI LL+F +I
Sbjct: 270 YYTLQLCDEIFSLRN--STSLYLYLDAILYFIYLLQFSMI 307


>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 441 KLNHGIIVSLIV*LYLYTMRIRIRLYPSS*VIK*STCGRNILFRRILPTIV 289
           K NH  I+S+I+ +  +T    +R+     ++   TC RN+LF  I+  I+
Sbjct: 20  KFNHCFIISIII-ISFFTTTKSVRVLLKQNLLP--TCTRNLLFSAIINGII 67


>AF016443-14|AAC24274.1|  217|Caenorhabditis elegans Hypothetical
           protein C17E7.1 protein.
          Length = 217

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 292 NCWQYSSE*YITTTGRSFNYLAGWIQSYTDTHRIQIQSY 408
           +CW+Y    YITTT +  NY  G+      +H +Q+  Y
Sbjct: 177 DCWEY----YITTTAKWLNYFNGF---KLLSHELQVGKY 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,818
Number of Sequences: 27780
Number of extensions: 257488
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)