Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0112.Seq
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51060.1 68418.m06329 respiratory burst oxidase protein C (Rb...    29   3.6  
At3g18630.1 68416.m02367 uracil DNA glycosylase family protein c...    29   3.6  
At3g51270.1 68416.m05612 RIO1 family protein contains Pfam profi...    28   6.4  

>At5g51060.1 68418.m06329 respiratory burst oxidase protein C
           (RbohC) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein C from Arabidopsis thaliana
           [gi:3242785]
          Length = 905

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 448 NFKIKPWNNCFIDCMIVSVYDAYPYTIVS 362
           NFK K     F++C  VS ++ +P++I S
Sbjct: 615 NFKYKSGQYMFVNCAAVSPFEWHPFSITS 643


>At3g18630.1 68416.m02367 uracil DNA glycosylase family protein
           contains Pfam profile: PF03167 uracil DNA glycosylase
           superfamily
          Length = 330

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 378 GYASYTDTIIQSMKQLFHGLILKLW 452
           G+  +TD +IQS+ Q   G++  LW
Sbjct: 248 GWEQFTDAVIQSISQQKEGVVFLLW 272


>At3g51270.1 68416.m05612 RIO1 family protein contains Pfam profile
           PF01163: RIO1 family
          Length = 472

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 469 MVCLEYHNFKIKPWNNCFIDCMIVSVYDAYPYTIVSIQLSN 347
           M  LE H+F +    +C   C+I+S+   YP   V  QL N
Sbjct: 174 MKALEEHDFPVPKAIDCNRHCVIMSLVQGYPMVQVK-QLQN 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,590,297
Number of Sequences: 28952
Number of extensions: 213717
Number of successful extensions: 368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)