Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0111.Seq
         (581 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    92   4e-21
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    92   4e-21
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    85   4e-19
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   1.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   3.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   3.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   3.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   3.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   3.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   3.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   3.3  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   5.8  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   5.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   5.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   7.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.6  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   7.6  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   7.6  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 91.9 bits (218), Expect = 4e-21
 Identities = 45/75 (60%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
 Frame = +1

Query: 79  QEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGLT-STRQLLVLV 255
           Q+FK+K+K D++ N RALRRLRT CERAKRTLSS+TQASIEIDSLF+G+  ST       
Sbjct: 71  QDFKKKHKADISGNPRALRRLRTQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARF 130

Query: 256 EELNADLFRSTMEPV 300
           E++N D F+  ++PV
Sbjct: 131 EDINMDYFKKCIDPV 145



 Score = 80.6 bits (190), Expect = 9e-18
 Identities = 56/137 (40%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
 Frame = +3

Query: 3   EVKSTAGDTHLGGEDFDNHMVNH----FVPGVQEEIQKGPRYQQESS*AFAYCM*EGKED 170
           EVK+TAGDTHLGGEDFDN +V +    F    + +I   PR  +        C    +  
Sbjct: 46  EVKATAGDTHLGGEDFDNRLVEYCTQDFKKKHKADISGNPRALRRLR---TQCERAKRTL 102

Query: 171 LVIVHTSEH*DRFSL*GIDFYTSITRAR-RGAERRSVQVYHGASEKSLRDAKMDKAQIHD 347
                 S   D     GID+ T+ITRAR         +      +K L+DAK+ K+ +H+
Sbjct: 103 SSATQASIEIDSL-FDGIDYSTTITRARFEDINMDYFKKCIDPVDKVLQDAKIGKSAVHE 161

Query: 348 IVLVGGSTRIPKVQKLL 398
           IVLVGGSTRIPKVQ+L+
Sbjct: 162 IVLVGGSTRIPKVQQLI 178



 Score = 29.1 bits (62), Expect = 0.029
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 377 PQGAEAPEDFFNGKELNKSINPDE 448
           P+  +   ++FNGKE  +SINPDE
Sbjct: 172 PKVQQLITEYFNGKEPCRSINPDE 195


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 91.9 bits (218), Expect = 4e-21
 Identities = 45/75 (60%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
 Frame = +1

Query: 79  QEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGLT-STRQLLVLV 255
           Q+FK+K+K D++ N RALRRLRT CERAKRTLSS+TQASIEIDSLF+G+  ST       
Sbjct: 71  QDFKKKHKADISGNPRALRRLRTQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARF 130

Query: 256 EELNADLFRSTMEPV 300
           E++N D F+  ++PV
Sbjct: 131 EDINMDYFKKCIDPV 145



 Score = 80.6 bits (190), Expect = 9e-18
 Identities = 56/137 (40%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
 Frame = +3

Query: 3   EVKSTAGDTHLGGEDFDNHMVNH----FVPGVQEEIQKGPRYQQESS*AFAYCM*EGKED 170
           EVK+TAGDTHLGGEDFDN +V +    F    + +I   PR  +        C    +  
Sbjct: 46  EVKATAGDTHLGGEDFDNRLVEYCTQDFKKKHKADISGNPRALRRLR---TQCERAKRTL 102

Query: 171 LVIVHTSEH*DRFSL*GIDFYTSITRAR-RGAERRSVQVYHGASEKSLRDAKMDKAQIHD 347
                 S   D     GID+ T+ITRAR         +      +K L+DAK+ K+ +H+
Sbjct: 103 SSATQASIEIDSL-FDGIDYSTTITRARFEDINMDYFKKCIDPVDKVLQDAKIGKSAVHE 161

Query: 348 IVLVGGSTRIPKVQKLL 398
           IVLVGGSTRIPKVQ+L+
Sbjct: 162 IVLVGGSTRIPKVQQLI 178



 Score = 29.1 bits (62), Expect = 0.029
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 377 PQGAEAPEDFFNGKELNKSINPDE 448
           P+  +   ++FNGKE  +SINPDE
Sbjct: 172 PKVQQLITEYFNGKEPCRSINPDE 195


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 85.0 bits (201), Expect = 4e-19
 Identities = 54/135 (40%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
 Frame = +3

Query: 3   EVKSTAGDTHLGGEDFDNHMVNHFVPGVQEEIQKGPRYQQESS*AFAYCM*EGKEDLVIV 182
           EV +T+GDTHLGGEDFD  ++++F+  V+++ +K  R  +++       + + K DL  V
Sbjct: 45  EVVATSGDTHLGGEDFDQKVMDYFIKMVKQKHKKDIRADKKALQKLRREVEKAKRDLSSV 104

Query: 183 HTSEH*DRFSL*GIDFYTSITRARRGAERRSVQVYHGAS--EKSLRDAKMDKAQIHDIVL 356
           H +       L   DF  ++TRA+   E  + Q        +K L DA M K QI +IVL
Sbjct: 105 HKTTLTIENLLADYDFSETLTRAKF-EELNNDQFLKTLKPVKKVLEDADMTKDQIDEIVL 163

Query: 357 VGGSTRIPKVQKLLK 401
           VGGSTRIPK+Q+L+K
Sbjct: 164 VGGSTRIPKIQQLIK 178



 Score = 35.1 bits (77), Expect = 4e-04
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +2

Query: 377 PQGAEAPEDFFNGKELNKSINPDE 448
           P+  +  +DFF+GKELN+ INPDE
Sbjct: 171 PKIQQLIKDFFDGKELNRGINPDE 194


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 569 TSSSLNTEGKGVTSSNSRSCTPQN 498
           TSS+ +TE  G  ++NS+S    N
Sbjct: 173 TSSTSSTEKAGTNNNNSKSSQSSN 196


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 569 TSSSLNTEGKGVTSSNSRSCTPQN 498
           TSS+ +TE  G  ++NS+S    N
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSSN 196


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 569 TSSSLNTEGKGVTSSNSRSCTPQN 498
           TSS+ +TE  G  ++NS+S    N
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSSN 196


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 569 TSSSLNTEGKGVTSSNSRSCTPQN 498
           TSS+ +TE  G  ++NS+S    N
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSSN 196


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 569 TSSSLNTEGKGVTSSNSRSCTPQN 498
           TSS+ +TE  G  ++NS+S    N
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSSN 196


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 569 TSSSLNTEGKGVTSSNSRSCTPQN 498
           TSS+ +TE  G  ++NS+S    N
Sbjct: 129 TSSTSSTEKAGTNNNNSKSGQSSN 152


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 569 TSSSLNTEGKGVTSSNSRSCTPQN 498
           TSS+ +TE  G  ++NS+S    N
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSSN 196


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 569 TSSSLNTEGKGVTSSNSRSCTPQN 498
           TSS+ +TE  G  ++NS+S    N
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSSN 196


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 401 DFFNGKELNKSINPDE 448
           DF NGK L++S   D+
Sbjct: 18  DFVNGKTLHRSTRDDK 33


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 65 DHVIVKVLTSQVGVAGGGFHL 3
          D V+VK  ++     GGGF L
Sbjct: 18 DFVVVKTRSNSPEAGGGGFWL 38


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 65 DHVIVKVLTSQVGVAGGGFHL 3
          D V+VK  ++     GGGF L
Sbjct: 18 DFVVVKTRSNSPEAGGGGFWL 38


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 13 PPPATPTWEVRTL 51
          PP   PTW VR L
Sbjct: 13 PPQEMPTWFVRWL 25


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 16   PPATPTWEVRTLTITWSTTLYQE 84
            PP   TW+++ +  T S  + Q+
Sbjct: 1334 PPPVITWKIKGVQFTTSDKIRQQ 1356


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 383 LGDTSGATHQYNIVDLSLIHLGITE 309
           LG+T  +   Y++V++S IH  + +
Sbjct: 194 LGETWTSLSVYHLVEISEIHFDLCQ 218


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 383 LGDTSGATHQYNIVDLSLIHLGITE 309
           LG+T  +   Y++V++S IH  + +
Sbjct: 190 LGETWTSLSVYHLVEISEIHFDLCQ 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,828
Number of Sequences: 336
Number of extensions: 3030
Number of successful extensions: 31
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)