Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0109.Seq
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   2.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   2.8  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   2.8  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   2.8  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.5  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 93  HLGST--WRPKISKRSTTKHKNGL 158
           H GST  W    + RST+KH+N L
Sbjct: 417 HAGSTQEWHSHTTPRSTSKHENNL 440


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 276  VYIFVWLKKKKNCIFSILQFFAHHQQLMYKKLRFQRKI 163
            VY+ +++K  + C+ S LQF     +L+ K  +F  K+
Sbjct: 950  VYLMIFIKIFQKCVHSKLQFTDATLKLIVKITKFIEKV 987


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 221 CKILNMQFFFFLSQTKIYTL*GSNV 295
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 221 CKILNMQFFFFLSQTKIYTL*GSNV 295
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 361 TYSTVINNINKYQQRYKIAFRKNIRSLK 278
           +YS  + N+  Y QR ++A   N+  LK
Sbjct: 172 SYSPALKNVLNYSQRERVANLANVSILK 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,845
Number of Sequences: 5004
Number of extensions: 37740
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)