Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0109.Seq
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0925 - 12440917-12441560,12441675-12441810                       31   0.53 
01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122...    31   0.53 
02_05_0482 + 29382696-29383251,29383376-29383692                       30   1.2  
01_01_0017 + 133311-133615,133698-133824,133912-134253                 29   2.1  
06_01_0900 + 6926600-6927202                                           28   3.7  
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868...    28   5.0  
01_03_0022 + 11724319-11725381,11725476-11725582                       28   5.0  
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573...    27   6.5  

>03_02_0925 - 12440917-12441560,12441675-12441810
          Length = 259

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 290 NVFTKGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCT 457
           N++++GY  +       ++ RG+   S   C    CA +HRR   P  A  T T T
Sbjct: 53  NLYSQGYGTSTAALSTALFNRGL---SCGSCYELRCAGDHRRSCLPGGATVTVTAT 105


>01_01_0134 -
           1224084-1224269,1224578-1224662,1224763-1225050,
           1225114-1225334,1225511-1225642,1226218-1226494,
           1226722-1226770,1226993-1227088,1227779-1227911,
           1228241-1228391,1228484-1228674,1229167-1229382
          Length = 674

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 99  GSTWRPKISKRSTTKHKNGLYRFF 170
           GS + PK+ ++STTKH+ G +R F
Sbjct: 338 GSEFSPKLIQKSTTKHRRGWWRQF 361


>02_05_0482 + 29382696-29383251,29383376-29383692
          Length = 290

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 114 VARSNLGGKVPKPSARAGRERWGAG 40
           ++R  LG K P P  R G+ER G G
Sbjct: 38  LSRKRLGAKPPSPQRRGGQEREGGG 62


>01_01_0017 + 133311-133615,133698-133824,133912-134253
          Length = 257

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 368 SASECVGCTCAREHRRDTPPTSAPHTRT 451
           S+S      C +   R+ PP  APHT T
Sbjct: 6   SSSTASAAACCKSRSRNPPPAPAPHTST 33


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 437 VRRWGACLGGARARTCIRRTRSHSRYILHG 348
           VR W   + G R +T IRR R   R+  HG
Sbjct: 76  VREWSELVAGPRWKTFIRRFRRSPRHHHHG 105


>05_03_0355 -
           12885898-12886290,12886351-12886644,12886744-12886871,
           12886952-12888482
          Length = 781

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 287 IPKVYIFLFGLKKKRIAYLVFYSFSLIINS 198
           +PKV++ +FGL+KK   YL  ++   ++ +
Sbjct: 657 LPKVWVKVFGLRKKLREYLTLWAVGSLLGA 686


>01_03_0022 + 11724319-11725381,11725476-11725582
          Length = 389

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 91  PT*VRPGDRRFLNVPLQNIKTD 156
           P  VRPGDRR L  P  +I  D
Sbjct: 252 PKWVRPGDRRLLQAPASSITPD 273


>01_06_0030 +
           25756294-25756575,25756977-25757101,25757276-25757313,
           25757501-25757611,25757703-25757782,25758264-25758318,
           25758465-25758851,25759080-25759223,25759630-25759671,
           25759755-25759837
          Length = 448

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 5   KGRAGSAARGVSPAPQRSRPALADGFGTFPP 97
           +  +G    G SP P+R+ PA AD     PP
Sbjct: 43  RAASGIPGPGGSPVPRRTTPAPADAAAAAPP 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,565
Number of Sequences: 37544
Number of extensions: 253471
Number of successful extensions: 925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)