Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0109.Seq
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    29   2.6  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    28   4.5  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF067214-3|AAC17002.1|  211|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +1

Query: 160 TDFSLKT*LFIH*LLMMSEKL*NTKYAILFFFKPNKNIYTLGI*CFYERLFCNVVDIYLY 339
           T +S +  +F+H L+++   +   K   +   K   +  T  +  FY   +    DIY  
Sbjct: 26  TSYSSRLNIFLHNLVIILTMVFTRKAVKIMLSKSMFSTTTRNL-LFYCMNYYIFHDIYFA 84

Query: 340 YLLPWSMYRECER 378
           + + WS+YR  E+
Sbjct: 85  FTMNWSLYRSIEK 97


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 365 ESASECV-GCTCAREHRRDTPPTSAPHTRTC 454
           ++ ++C+ GCTC   ++RD+      H+R C
Sbjct: 484 KAPAKCLPGCTCRPAYKRDSDSGQCVHSRQC 514


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 365 ESASECV-GCTCAREHRRDTPPTSAPHTRTC 454
           ++ ++C+ GCTC   ++RD+      H+R C
Sbjct: 484 KAPAKCLPGCTCRPAYKRDSDSGQCVHSRQC 514


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
           protein C52E12.4 protein.
          Length = 1487

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 507 FYDN--DIALLDVKWRVRGVHVRVCGAEVGGVSRRCSRAHVHPTHSLALSIHT-PR 349
           FY+   D+A+ D   +++  HVR   A   G+  +  R H HP  +++   HT PR
Sbjct: 122 FYEEVKDLAICDAMAQLQQDHVREITARHNGIIEKQQRIH-HPPGTVSGGTHTLPR 176


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 242 IAYLVFYSFSLIINS*CIKSYV 177
           I  L+FY F+  INS C+K Y+
Sbjct: 34  ITELIFYFFAFYINSVCLKVYL 55


>AF067214-3|AAC17002.1|  211|Caenorhabditis elegans Hypothetical
           protein F56C3.5 protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 93  HLGSTWRPKISKRSTTKHKNGLYRFFVENVTFY 191
           H      P+I KR + K+ NG++  F+  + FY
Sbjct: 170 HCSENMGPEI-KRMSIKYNNGIFYLFINLIDFY 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,824
Number of Sequences: 27780
Number of extensions: 223713
Number of successful extensions: 731
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)