Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0109.Seq
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    25   0.34 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.79 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.2  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   5.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.7  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 347 YRGVCIE----SASECVGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTSNKAIS 496
           Y G+C E    S ++C+GC+  +     T     PH  +     +   S+ AI+
Sbjct: 75  YLGICAEGMQCSCNKCIGCSAEKFECSKTSNPCLPHRNSDRDLNIRKWSSIAIN 128


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 401  REHRRDTPPTSAPHTRTCTPRT 466
            R+H  +  P   PH  TCT  T
Sbjct: 1073 RQHTAEGVPEQPPHDTTCTTLT 1094


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 237 IFSILQFFAHHQQ 199
           IFS++ F AH QQ
Sbjct: 333 IFSVVGFMAHEQQ 345


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 237 IFSILQFFAHHQQ 199
           IFS++ F AH QQ
Sbjct: 386 IFSVVGFMAHEQQ 398


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 292 CFYERLFCNVVDIYLYYLLPWSMYRECER 378
           C  +R  C+V+   +  LLP  +   C R
Sbjct: 39  CILDRGHCDVIGKKIKELLPEVLNNHCNR 67


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 56  SRPALADGFGTFPPRFDLATED 121
           S+P  A+ F  FPP    A  D
Sbjct: 407 SKPMCAEAFQEFPPLGRFAVRD 428


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 410 GARARTCIRRTRSHSRY 360
           G+R+R+  R +  HSRY
Sbjct: 218 GSRSRSFQRTSSCHSRY 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,913
Number of Sequences: 438
Number of extensions: 2913
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)