Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0108.Seq
         (810 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    41   0.042
UniRef50_Q15PA9 Cluster: Beta-ketoacyl synthase; n=11; Gammaprot...    33   6.4  
UniRef50_Q9NZJ4 Cluster: Sacsin; n=44; Deuterostomia|Rep: Sacsin...    33   8.5  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 40.7 bits (91), Expect = 0.042
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +3

Query: 3   RPPTWWSDDLQKGAEICWI*ATQNRSLF*TFRKTYVHQLT 122
           RPPT W+DDL K A   W+ A Q+RSL+ +  + +V Q T
Sbjct: 455 RPPTRWTDDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWT 494


>UniRef50_Q15PA9 Cluster: Beta-ketoacyl synthase; n=11;
           Gammaproteobacteria|Rep: Beta-ketoacyl synthase -
           Pseudoalteromonas atlantica (strain T6c / BAA-1087)
          Length = 638

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +3

Query: 342 RYFDNFRQINQKLA*FQEGIQRYREEA*SLEGTIYRSSRTGRFMVINDVWEHNVSVN 512
           R+FDN R+ NQ+    +E ++R+ E+   L  T+ R+     F V    W+ NV+++
Sbjct: 58  RFFDNARENNQQTLTPEEVVERFSEQI--LNSTLIRTIEKSHFDVNAVHWQKNVTMH 112


>UniRef50_Q9NZJ4 Cluster: Sacsin; n=44; Deuterostomia|Rep: Sacsin -
            Homo sapiens (Human)
          Length = 4579

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -2

Query: 470  ESPGSRTPVYCTF*TLCLLSIPLYTLLKSRQFLVNLPKIIKISN 339
            E     TP  C F  LC L   L  LL S QF+  L +I+K  N
Sbjct: 3980 EQLDEETPKVCQFGALCSLQGRLQLLLSSEQFITGLIRIMKHEN 4023


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,715,995
Number of Sequences: 1657284
Number of extensions: 14331943
Number of successful extensions: 29218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29216
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)