Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0108.Seq
         (810 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.94 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.9  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   2.9  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   6.6  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 485 CLGTQCFCELIKRTQPKDIPRTIDINSPLTLLYSKHVN 598
           C+   CFC     T P D+P + D+   +T+ +   +N
Sbjct: 168 CVLPDCFCSEDGTTIPGDLP-SKDVPQMITITFDDAIN 204


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 252 YYKKHLKQVFILHM*MLRSTHNIQT 178
           +YK  L QV I+H  +L + + IQT
Sbjct: 212 HYKNFLSQVEIIHNEILVTHNEIQT 236


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 252 YYKKHLKQVFILHM*MLRSTHNIQT 178
           +YK  L QV I+H  +L + + IQT
Sbjct: 37  HYKNFLSQVEIIHNEILVTHNEIQT 61


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 559 NINSPGDVFWLRSF 518
           N N  GD+FW   F
Sbjct: 387 NRNDKGDIFWFSPF 400


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,047
Number of Sequences: 336
Number of extensions: 4038
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)