Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0108.Seq
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   3.2  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    27   3.2  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   5.5  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    26   5.5  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    26   7.3  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   7.3  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     26   7.3  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   9.6  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   9.6  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 762  HRNDRCLEKQKKKLQINLFSFSIRESVILKTAQTNMLE 649
            HR    L+K+KK L++ LF   ++   I  +    ML+
Sbjct: 1935 HRQLGVLQKEKKDLELKLFDLDLKTYPISTSKDVRMLQ 1972


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 568 WRININSPGDVFWLRSFNKFTETLCSQTSFI 476
           W    N P   +WL+  N+ +  LC+  ++I
Sbjct: 118 WAFMANDPSMKYWLKLTNQLSGLLCASLNYI 148


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 266  RTPTIIIKNI*SKFLYCICKCCDRLTIFKLDKGYRIKNSYVSSSSVLKRQLM 111
            +TP     ++  K L C+ K      + KL K Y+ + S V+    + R LM
Sbjct: 1186 KTPPFFSSSVPLKALICVSKLNLFSELIKLLKSYKFQVSIVTDEDKMLRTLM 1237


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 444 YRSSRTGRFMVINDVWEHNVSVNLLK 521
           Y   R G+F VIN  W  + + NL+K
Sbjct: 199 YYPERMGKFYVINAPWGFSSAFNLIK 224


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 150 RVFNSVTFIKFEYCESIAAFTYAV 221
           ++FNSV F+ FEY E   +F+Y +
Sbjct: 270 KLFNSVDFLNFEY-EGDLSFSYGM 292


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 422 CLLSIPLYTLLKSRQFLVN 366
           CLL IPL  LLKS+  L++
Sbjct: 727 CLLIIPLSILLKSKNLLID 745


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 497 QCFCELIKRTQPKDIPRTIDINSPLTLLYSKHVNTLYKILSANNIYL*SSYSN 655
           Q   +L+   Q   +P+ I +    TLL    ++  YK LS NN+    SYSN
Sbjct: 437 QNLAKLVHSMQSMAVPKEIQMYVKDTLL---SLDMAYKALSQNNLNEALSYSN 486


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 556 INSPGDVFWLRSFNK 512
           I+SP  VFW+ +FNK
Sbjct: 297 IDSPKPVFWVEAFNK 311


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +2

Query: 437 YNIQEF*NRAIHGNKRCLGTQCFCELIKRTQPKDIPRT--IDINSPLTLLYSKHVNTLYK 610
           Y ++ F  R  H +K         +++ + +P  I  T  I +NSP   L S+ V  + +
Sbjct: 25  YGLKRFGCRLYHHSKSTRYIDATAKVVSQ-EPAAISSTGAIPLNSPAAPLLSQDVLIVER 83

Query: 611 ILSANNIYL*SSYSNIFV 664
            L   N++L    +N +V
Sbjct: 84  QLEMMNVFLGYEQANRYV 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,336
Number of Sequences: 5004
Number of extensions: 65998
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)