Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0108.Seq
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    29   3.3  
07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635     29   4.4  

>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
            19799503-19799671,19799758-19799850
          Length = 1330

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 529  LRSFNKFTETLCSQTSFITMNRPVLELLYIVPSRLYASSLYLC 401
            LRS     +TL S  S +  N P+LE L  +P  L+A  +  C
Sbjct: 1163 LRSLPSTMDTLHSLRSLVLCNAPLLETLPAMPPNLWALQISGC 1205


>07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635
          Length = 110

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 212 CKCCDRLTIFKLDKGYRIKNSYVSSSSVLKRQLM 111
           C CC RL  ++ +K Y     Y     +L++ +M
Sbjct: 73  CSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMM 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,907,227
Number of Sequences: 37544
Number of extensions: 366723
Number of successful extensions: 584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)