Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0108.Seq
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97405-11|AAB53004.1| 672|Caenorhabditis elegans Hypothetical p... 29 5.2
U88312-1|AAB42351.1| 255|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 28 9.1
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 28 9.1
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 28 9.1
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 28 9.1
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 28 9.1
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 28 9.1
>U97405-11|AAB53004.1| 672|Caenorhabditis elegans Hypothetical
protein T09B4.1 protein.
Length = 672
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 544 GDVFWLRSFNKFTETLCSQTSFITMNRPVLELLYI 440
G FW R FT T+C +F + +L LY+
Sbjct: 321 GKGFWHRMLKGFTGTICFGLTFAVRSNGLLNFLYV 355
>U88312-1|AAB42351.1| 255|Caenorhabditis elegans Hypothetical
protein F25F6.1 protein.
Length = 255
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 484 SFITMNRPVLELLYIVPSRLYASSLYLCIPS 392
SF + RP+++ LY+ PSR Y Y PS
Sbjct: 62 SFHNIPRPLIKQLYVSPSRKYVEKNYEIPPS 92
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 462 GRFMVINDVWEHNVSVNLLKERNQKTSP 545
GRF I D EH V++ LLK R+Q P
Sbjct: 495 GRFKHITDGKEHTVALALLKCRSQDEGP 522
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 462 GRFMVINDVWEHNVSVNLLKERNQKTSP 545
GRF I D EH V++ LLK R+Q P
Sbjct: 1024 GRFKHITDGKEHTVALALLKCRSQDEGP 1051
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 462 GRFMVINDVWEHNVSVNLLKERNQKTSP 545
GRF I D EH V++ LLK R+Q P
Sbjct: 705 GRFKHITDGKEHTVALALLKCRSQDEGP 732
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 462 GRFMVINDVWEHNVSVNLLKERNQKTSP 545
GRF I D EH V++ LLK R+Q P
Sbjct: 495 GRFKHITDGKEHTVALALLKCRSQDEGP 522
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 462 GRFMVINDVWEHNVSVNLLKERNQKTSP 545
GRF I D EH V++ LLK R+Q P
Sbjct: 1024 GRFKHITDGKEHTVALALLKCRSQDEGP 1051
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 462 GRFMVINDVWEHNVSVNLLKERNQKTSP 545
GRF I D EH V++ LLK R+Q P
Sbjct: 705 GRFKHITDGKEHTVALALLKCRSQDEGP 732
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 242 NI*SKFLYCICKCCDRLTIFKLDKGYRIKNSYVSSSSVLKRQLM 111
N+ ++ L +CK CD +G+R+ NS V L++ L+
Sbjct: 1792 NLCARVLQTLCKMCDCTKQQLTHQGHRVYNSSVEKGQQLRQLLL 1835
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 242 NI*SKFLYCICKCCDRLTIFKLDKGYRIKNSYVSSSSVLKRQLM 111
N+ ++ L +CK CD +G+R+ NS V L++ L+
Sbjct: 1792 NLCARVLQTLCKMCDCTKQQLTHQGHRVYNSSVEKGQQLRQLLL 1835
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,059,024
Number of Sequences: 27780
Number of extensions: 366745
Number of successful extensions: 766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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