Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0108.Seq
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59630.1 68414.m06706 F-box family protein-related contains w...    33   0.30 
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    28   6.4  

>At1g59630.1 68414.m06706 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to  F-box protein family, AtFBX9
           (GI:20197985) [Arabidopsis thaliana] contains weak hit
           to TIGRFAM TIGR01640 : F-box protein interaction domain;
          Length = 239

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -3

Query: 481 FITMNRPVLELL-------YIVPSRLYASSLYLCIPS*NHANFWLICLKLSKYRIIKHRQ 323
           F+T++RP   +L       Y V + +Y  SL LC PS      W+  ++    + IK   
Sbjct: 162 FMTLSRPDFPILLSHISTSYFVDNDIYGKSLVLCCPSTKPRQAWVYIVRGDLCKKIKIDG 221

Query: 322 VECR 311
           V+CR
Sbjct: 222 VQCR 225


>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 808 NLAPTPLVIDFANVTSQK*QV--LRETKEKTANKFVQFFHTR 689
           NLAP+    D  N+     ++  +RET  K  +KFV+FF  R
Sbjct: 228 NLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVR 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,875
Number of Sequences: 28952
Number of extensions: 323044
Number of successful extensions: 671
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)