Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0106.Seq
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 2e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 101 9e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 2e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 3e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 67 2e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 58 8e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 47 2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 33 0.036
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.25
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.33
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.1
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 26 4.1
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 5.4
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.2
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 9.5
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 9.5
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (420), Expect = 2e-44
Identities = 77/84 (91%), Positives = 81/84 (96%)
Frame = +2
Query: 257 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 436
PIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN+
Sbjct: 70 PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNA 129
Query: 437 PAMYVAIQAVLSLYASGRTTGIVL 508
PA YVAIQAVLSLYASGRTTGIVL
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVL 153
Score = 127 bits (307), Expect = 1e-30
Identities = 58/69 (84%), Positives = 64/69 (92%)
Frame = +3
Query: 54 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRLRHQGVMVGMGQKDSYVGYEAQSK 233
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGR RH G+MVGMGQKDSYVG EAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 234 TGILTLKTP 260
GILTLK P
Sbjct: 62 RGILTLKYP 70
Score = 90.6 bits (215), Expect = 2e-19
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = +1
Query: 511 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG*SF 648
SGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERG +F
Sbjct: 155 SGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTF 200
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 101 bits (242), Expect = 9e-23
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 PIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 433
PIE GII NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N
Sbjct: 74 PIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLN 133
Query: 434 SPAMYVAIQAVLSLYASGRTTGIVL 508
PA+ ++Q VL+LYAS RTTGIVL
Sbjct: 134 VPALSFSLQPVLALYASARTTGIVL 158
Score = 78.2 bits (184), Expect = 1e-15
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = +3
Query: 60 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRLRHQGVMVGMGQKDSYVGYEAQSKTG 239
D + +DNGSG KAGFAGDD P+ +FP+ VGR++H+ VM QKD +VG EAQ+ G
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 240 ILTLKTP 260
+L ++ P
Sbjct: 68 LLKIQRP 74
Score = 53.6 bits (123), Expect = 2e-08
Identities = 21/42 (50%), Positives = 33/42 (78%)
Frame = +1
Query: 514 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 639
GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G
Sbjct: 161 GDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSG 202
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (239), Expect = 2e-22
Identities = 42/84 (50%), Positives = 64/84 (76%)
Frame = +2
Query: 257 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 436
P+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129
Query: 437 PAMYVAIQAVLSLYASGRTTGIVL 508
+YVAIQAVLSLYA G ++G+V+
Sbjct: 130 GGVYVAIQAVLSLYAQGLSSGVVV 153
Score = 58.0 bits (134), Expect = 1e-09
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 511 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG*SF 648
SGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +G +F
Sbjct: 155 SGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAF 200
Score = 53.6 bits (123), Expect = 2e-08
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +3
Query: 66 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR--LRHQGVMVGMGQKDSYVGYEAQSKTG 239
A +V+DNG+G K G+A D+ PR FPSIVGR LR + + KD VG EA++
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 240 ILTLKTP 260
+L +K P
Sbjct: 64 LLQVKYP 70
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/76 (55%), Positives = 52/76 (68%)
Frame = +2
Query: 257 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 436
PI HG I NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN
Sbjct: 93 PIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNC 152
Query: 437 PAMYVAIQAVLSLYAS 484
+Y+A+QAVL+L AS
Sbjct: 153 AGLYIAVQAVLALAAS 168
Score = 48.0 bits (109), Expect = 1e-06
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +1
Query: 511 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 636
SGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 186 SGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 42.3 bits (95), Expect = 6e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +3
Query: 72 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRLRHQGVMVG--MGQKDSYV 212
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 69.7 bits (163), Expect = 3e-13
Identities = 31/86 (36%), Positives = 49/86 (56%)
Frame = +2
Query: 251 EDPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 430
++ I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MFE+
Sbjct: 66 KNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESL 125
Query: 431 NSPAMYVAIQAVLSLYASGRTTGIVL 508
PA Y+A Q + +ASG+ T ++
Sbjct: 126 RCPATYLAKQETCAAFASGKGTACLV 151
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 57 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 158
D+V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.9 bits (156), Expect = 2e-12
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 SEDPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 427
+ P E +I+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 428 FNSPAMYVAIQAVLSLYASGR--TTGIVL 508
+N+P++ I + S Y + + ++GIVL
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVL 170
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 3 ESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRLR 167
E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 8 EPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 514 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG*SF 648
G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 173 GNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 58.4 bits (135), Expect = 8e-10
Identities = 24/81 (29%), Positives = 48/81 (59%)
Frame = +2
Query: 266 HGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 445
+GII +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 446 YVAIQAVLSLYASGRTTGIVL 508
Y+ QAV +A+ ++T +++
Sbjct: 134 YLTKQAVCVAFANSKSTALIV 154
Score = 34.3 bits (75), Expect = 0.015
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 57 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 158
+++ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +2
Query: 242 PHSEDPIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT 409
P+ PI+ G + +W+ ++ W H Y+ L P + +PV L +RE T
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 410 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 508
Q FE P +A + ++ LYA G G+V+
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVI 199
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 33.1 bits (72), Expect = 0.036
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 511 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 636
SG +H +P+ + A+ R+D+ G+ LT+YL ++++ R
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 317 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 460
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 117 GDDAPRAVFPSIVGRLRHQGVMVGMGQKDSYVGYEAQSKTGILTLKTPSSTVS 275
G+ PRA F ++ H G+++ M KD G E S G + +TP + +S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTPENEIS 552
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 542 STKVTLCPTPSSVWTW 589
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 359 LLTEAPLNPKANREKMTQIMFETFN 433
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 425 TFNSPAMYVAIQAVLSLYASGRTTGIVLTPEMVSPTPYPSTKVTLCPTPSSVWTW 589
TF+ + + ++ L G T+G LTP P PS K +P TW
Sbjct: 174 TFDDLQLTPLQRKLMGLPEGGSTSGKHLTPPRYRPNFSPSRKAENVKSPVRSTTW 228
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 159 RLRHQGVMVGMGQKDSYVGYEAQSKTGILTLK 254
RL +M+G +Y+G AQ K +LT +
Sbjct: 159 RLSQYAIMIGAIHGFAYIGLAAQGKRALLTAR 190
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 476 YASGRTTGIVLTPEMVSPTPYPSTKVT 556
Y G TT + T V+PTP PS VT
Sbjct: 22 YTPGFTTDVATT---VTPTPLPSANVT 45
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 543 LRRLRSAPRHPPSGLGWSRLDRLPHED 623
L++ + +H G WS LDR H+D
Sbjct: 254 LKKSKRVKKHDYGGEDWSLLDRKFHDD 280
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 512 PEMVSPTPYPSTKVTLCPTPSS 577
P+ V+ P+P T TL TPS+
Sbjct: 243 PDQVALPPFPDTNSTLTYTPSN 264
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 541 IYEGYALPHAILRLDLAGRDLTDYLMKIL 627
+ EG +P++ ++++ G D+T MK+L
Sbjct: 308 VEEGVVVPNSRIKINYGGDDITLLFMKLL 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,333
Number of Sequences: 5004
Number of extensions: 58080
Number of successful extensions: 254
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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