Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0104.Seq
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    96   2e-21
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    27   1.6  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   6.6  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 41/59 (69%), Positives = 52/59 (88%)
 Frame = +3

Query: 255 GEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNAR 431
           GEP++R+A+PLA+ L S SNPQ+ + D L++YSHD+D DVAYNAIFAMGLVGAGT+NAR
Sbjct: 663 GEPSIRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNAR 721



 Score = 33.9 bits (74), Expect = 0.011
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 151 SSVQAVATLGVAVIALAEETGAEMCTRIFGQL 246
           +++Q  A LGVA IA+ E+ GAEM  R F  +
Sbjct: 628 TTIQTFAALGVATIAMGEDIGAEMVLRHFDHM 659


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +3

Query: 297 LCSVSNPQ------LSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTN 422
           +C   NPQ        VI VL+K  +  D DV  +A++A+  +  G N
Sbjct: 233 MCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGAN 280


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 149 CPRCKPWRPLASRSSHWPRKRAPK 220
           CP CK +RP   R   W   R PK
Sbjct: 713 CPGCKAFRPATKRLEIW---RLPK 733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,786
Number of Sequences: 5004
Number of extensions: 15421
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)