Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0104.Seq
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 76 1e-14
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 76 1e-14
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 76 1e-14
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 32 0.23
01_01_1063 - 8386813-8387236,8387322-8387779 29 1.2
05_07_0072 + 27490881-27490949,27491756-27491837,27492758-274928... 28 3.7
04_04_0290 - 24174361-24174744,24175057-24175209,24175323-241755... 27 4.9
04_03_1026 - 21806124-21806225,21807017-21807055,21807307-218074... 27 6.5
04_03_0190 + 12448027-12450825 27 8.6
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 76.2 bits (179), Expect = 1e-14
Identities = 32/59 (54%), Positives = 48/59 (81%)
Frame = +3
Query: 255 GEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNAR 431
GE +RRAVPLA+ L +SNP+++V+D +++ SHD+D +V+ AI ++GL+GAGTNNAR
Sbjct: 711 GEQNIRRAVPLALGLLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNAR 769
Score = 31.5 bits (68), Expect = 0.30
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 160 QAVATLGVAVIALAEETGAEMCTRIFGQL 246
Q A LG+++I++AEE GAEM R +L
Sbjct: 679 QGPAVLGISLISMAEELGAEMAVRSLERL 707
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 76.2 bits (179), Expect = 1e-14
Identities = 32/59 (54%), Positives = 48/59 (81%)
Frame = +3
Query: 255 GEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNAR 431
GE +RRAVPLA+ L +SNP+++V+D +++ SHD+D +V+ AI ++GL+GAGTNNAR
Sbjct: 674 GEQNIRRAVPLALGLLCISNPKVNVMDTMSRLSHDADAEVSMAAIISLGLIGAGTNNAR 732
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 160 QAVATLGVAVIALAEETGAEMCTRIFGQL 246
Q A LG+++IA+AEE GAEM R +L
Sbjct: 642 QGPAVLGISLIAMAEELGAEMAVRSLERL 670
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 76.2 bits (179), Expect = 1e-14
Identities = 32/59 (54%), Positives = 47/59 (79%)
Frame = +3
Query: 255 GEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNAR 431
GE +RRAVPLA+ + +SNP+++V+D L++ SHD+D DV+ AI ++G +GAGTNNAR
Sbjct: 671 GEQNIRRAVPLALGILCISNPKVNVMDTLSRLSHDADADVSMAAIISLGFIGAGTNNAR 729
Score = 33.9 bits (74), Expect = 0.057
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 160 QAVATLGVAVIALAEETGAEMCTRIFGQL 246
Q A LG+A+IA+AEE GAEM R +L
Sbjct: 639 QGPAVLGIALIAMAEELGAEMAVRSLERL 667
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 339 LNKYSHDSDNDVAYNAIFAMGLVGAGTNN 425
L+KY H +D V A+ +G+V G N
Sbjct: 440 LDKYLHSNDAHVVAGALLGIGIVTCGVKN 468
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 347 FIEHVDDGELRVGHGAQGDGERHGAPHCRLPYLPSCPKMRVHISAPVSSANAMTATP 177
FI +D G HG Q DGER H P+ + P+ + P S++ T +P
Sbjct: 178 FINDLDAGRHDAVHGEQPDGERDADEHRGQPHQRAAPR---DVQPPSPSSSPATTSP 231
>01_01_1063 - 8386813-8387236,8387322-8387779
Length = 293
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -2
Query: 347 FIEHVDDGELRVGHGAQGDGERHGAPHCRL--PYLPSCPKMRVHISAPVSSANAMTATPR 174
++ + +LR H G HGAPH + P +P P H P ++A + P
Sbjct: 210 YVTALQTNKLRAQHPVGGYYVGHGAPHPGMPPPPMPYGPHPHPHQPPPPAAAATAPSAPE 269
Query: 173 VATACTE 153
+ A +
Sbjct: 270 ITPAACQ 276
>05_07_0072 +
27490881-27490949,27491756-27491837,27492758-27492821,
27492992-27493055,27493295-27493357,27493458-27493558,
27493663-27493729,27493821-27493892,27493997-27494158,
27494791-27494864,27494943-27495040,27495471-27495578,
27495746-27495813,27495907-27496044,27496150-27496197,
27496433-27496645
Length = 496
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 321 LSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNA 428
L ID L K + D +A+ A+GL+G ++NA
Sbjct: 311 LLAIDKLLKMEESQNTDETESALEALGLIGTNSSNA 346
>04_04_0290 -
24174361-24174744,24175057-24175209,24175323-24175581,
24175659-24176167
Length = 434
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 326 GELRVGHGAQGDGERHGAPHCRLPYLPSCPKMRVHISAP 210
GE+ +G AQG G+ AP L LP+ + R H +AP
Sbjct: 116 GEVVLGTPAQGQGQAREAPSALLRRLPARVR-RPHPTAP 153
>04_03_1026 -
21806124-21806225,21807017-21807055,21807307-21807407,
21807924-21808185,21808334-21808458,21809058-21809637
Length = 402
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 269 HCRLPYLPSCPKMRVHISAP 210
H +PY CP+++V+IS P
Sbjct: 309 HRAIPYPNGCPELKVYISVP 328
>04_03_0190 + 12448027-12450825
Length = 932
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 296 GDGERHGAPHCRLPYLPSC 240
G G G HC LPY P C
Sbjct: 152 GRGNLDGDYHCALPYSPQC 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,200,260
Number of Sequences: 37544
Number of extensions: 132051
Number of successful extensions: 588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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