Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0104.Seq
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)                35   0.025
SB_38834| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.025
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.10 
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  

>SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)
          Length = 638

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +1

Query: 154 SVQAVATLGVAVIALAEETGAEMCTRIFGQL 246
           S Q +A LG+A+IA+ EE GA+M  R F  L
Sbjct: 608 SHQGIAVLGIALIAMGEEIGAQMGLRAFNHL 638



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 339 LNKYSHDSDNDVAYNAIFAMGLVGAGTNN 425
           ++KY + SD+ +   A+ A G+V +G  N
Sbjct: 428 IDKYLYSSDDYIKAGALLACGIVNSGVRN 456


>SB_38834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +1

Query: 154 SVQAVATLGVAVIALAEETGAEMCTRIFGQL 246
           S Q +A LG+A+IA+ EE GA+M  R F  L
Sbjct: 46  SHQGIAVLGIALIAMGEEIGAQMGLRAFNHL 76


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 22/55 (40%), Positives = 29/55 (52%)
 Frame = -3

Query: 415  PAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTARRTAGSPT 251
            P PTSP A     A ++    E  L ++  E+C  DT++R  ASG A   A SPT
Sbjct: 1938 PGPTSPHAI----AAAVMSHLEKTLPSTTKENCN-DTDNRRKASGKATGNAQSPT 1987


>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 270 RRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVA 377
           ++   L  ALC  S   L ++D+L K  H  D+D+A
Sbjct: 480 KQVFELLSALCLYSEQGLGLLDILTKLRHLDDDDLA 515


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,142,199
Number of Sequences: 59808
Number of extensions: 143163
Number of successful extensions: 400
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)