Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0104.Seq
         (432 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145304-1|AAF08385.1|  919|Drosophila melanogaster 26S proteaso...    98   5e-21
AF132182-1|AAD34770.1|  919|Drosophila melanogaster unknown prot...    98   5e-21
AE014296-3245|AAF49095.2|  919|Drosophila melanogaster CG7762-PA...    98   5e-21
AE014296-3165|AAF49150.3| 1242|Drosophila melanogaster CG9299-PA...    28   6.2  

>AF145304-1|AAF08385.1|  919|Drosophila melanogaster 26S proteasome
           regulatory complexsubunit p97 protein.
          Length = 919

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 44/58 (75%), Positives = 53/58 (91%)
 Frame = +3

Query: 258 EPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNAR 431
           EPA+RRAVPLA+ L S SNP+L++ID L+K+SHDSD +VA+NAIFAMGLVGAGTNNAR
Sbjct: 694 EPAIRRAVPLALGLISASNPKLNIIDTLSKFSHDSDAEVAHNAIFAMGLVGAGTNNAR 751



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +1

Query: 148 LSSVQAVATLGVAVIALAEETGAEMCTRIFGQLGR 252
           LS+ Q++A LG+A+IA+ E+ GAEM  R FG L R
Sbjct: 657 LSATQSIAVLGIALIAMGEDIGAEMAYRSFGNLLR 691



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 IDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNN 425
           + +++KY + +D+++   A+ A G+V  G  N
Sbjct: 422 LTMIDKYLYSTDDNIKSGALLACGIVNCGIRN 453


>AF132182-1|AAD34770.1|  919|Drosophila melanogaster unknown
           protein.
          Length = 919

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 44/58 (75%), Positives = 53/58 (91%)
 Frame = +3

Query: 258 EPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNAR 431
           EPA+RRAVPLA+ L S SNP+L++ID L+K+SHDSD +VA+NAIFAMGLVGAGTNNAR
Sbjct: 694 EPAIRRAVPLALGLISASNPKLNIIDTLSKFSHDSDAEVAHNAIFAMGLVGAGTNNAR 751



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +1

Query: 148 LSSVQAVATLGVAVIALAEETGAEMCTRIFGQLGR 252
           LS+ Q++A LG+A+IA+ E+ GAEM  R FG L R
Sbjct: 657 LSATQSIAVLGIALIAMGEDIGAEMAYRSFGNLLR 691



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 IDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNN 425
           + +++KY + +D+++   A+ A G+V  G  N
Sbjct: 422 LTMIDKYLYSTDDNIKSGALLACGIVNCGIRN 453


>AE014296-3245|AAF49095.2|  919|Drosophila melanogaster CG7762-PA
           protein.
          Length = 919

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 44/58 (75%), Positives = 53/58 (91%)
 Frame = +3

Query: 258 EPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNAR 431
           EPA+RRAVPLA+ L S SNP+L++ID L+K+SHDSD +VA+NAIFAMGLVGAGTNNAR
Sbjct: 694 EPAIRRAVPLALGLISASNPKLNIIDTLSKFSHDSDAEVAHNAIFAMGLVGAGTNNAR 751



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +1

Query: 148 LSSVQAVATLGVAVIALAEETGAEMCTRIFGQLGR 252
           LS+ Q++A LG+A+IA+ E+ GAEM  R FG L R
Sbjct: 657 LSATQSIAVLGIALIAMGEDIGAEMAYRSFGNLLR 691



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 IDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNN 425
           + +++KY + +D+++   A+ A G+V  G  N
Sbjct: 422 LTMIDKYLYSTDDNIKSGALLACGIVNCGIRN 453


>AE014296-3165|AAF49150.3| 1242|Drosophila melanogaster CG9299-PA
           protein.
          Length = 1242

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -2

Query: 323 ELRVGHGAQGDGERHGAPHCRLPYLPSCPKMRVHISAPVSSANAMTATPRVATA 162
           ++  G+G  G G   GA   +    P+  K+  + +  +S+ +A  A  ++AT+
Sbjct: 505 KVATGYGGSGSGYSSGAVSHQYVSKPAVAKVATYAAPAISTYSAAPAVTKIATS 558


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,220,997
Number of Sequences: 53049
Number of extensions: 206496
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1355285490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)