Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0104.Seq
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    99   7e-22
U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z49909-1|CAA90105.1|  298|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =   99 bits (238), Expect = 7e-22
 Identities = 44/59 (74%), Positives = 54/59 (91%)
 Frame = +3

Query: 255 GEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNAR 431
           GEP +RRAVPLA++L SVSNPQL++++ L+K+SHDSD D A+NAIFAMGLVGAGTNNAR
Sbjct: 741 GEPVIRRAVPLALSLLSVSNPQLNILETLSKFSHDSDADTAHNAIFAMGLVGAGTNNAR 799



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +1

Query: 148 LSSVQAVATLGVAVIALAEETGAEMCTRIFGQLGR*G 258
           LSS QAVA LG+ +IA+ ++ G++M  R+FG L R G
Sbjct: 705 LSSQQAVAVLGIGLIAMGDDIGSQMALRMFGHLIRYG 741


>U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical
           protein B0563.6a protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 11  LRNKTRRTQKKLQQLRAVQRTTNPKV 88
           LR+  RRTQ  +Q+  +V+ TTN KV
Sbjct: 338 LRSFVRRTQSVIQKQGSVEHTTNSKV 363


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 272 PHCRLPYLPSCPKMRVHISAPVSSANAMTATPRVATACTE 153
           P C+ P  P C + +    APV    A TA P+V T   E
Sbjct: 311 PQCQQPSAPQCQQCQSACQAPV----ATTAAPQVVTIILE 346


>Z49909-1|CAA90105.1|  298|Caenorhabditis elegans Hypothetical
           protein C14A4.1 protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 258 EPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSHDSDNDVAYNAIFAMGLV 407
           EP VR       AL ++++P  SV DVL KY+ D   +V+     A+G V
Sbjct: 89  EPMVRHEA--GEALGAIADP--SVKDVLRKYAQDPCPEVSETCQIALGRV 134


>U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical
           protein B0563.6b protein.
          Length = 417

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 11  LRNKTRRTQKKLQQLRAVQRTTNPK 85
           LR+  RRTQ  +Q+  +V+ TTN K
Sbjct: 329 LRSFVRRTQSVIQKQGSVEHTTNSK 353


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 305 GAQGDGERHGAPHC 264
           G  G G RHG PHC
Sbjct: 349 GRHGHGGRHGPPHC 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,474,523
Number of Sequences: 27780
Number of extensions: 98455
Number of successful extensions: 338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)