Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0102.Seq
         (789 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    42   0.023
UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;...    36   1.2  
UniRef50_P68579 Cluster: SPBc2 prophage-derived sublancin-168-pr...    35   2.7  
UniRef50_Q7RLT2 Cluster: Putative uncharacterized protein PY0245...    34   3.5  
UniRef50_Q8IKX8 Cluster: 3'-5' exonuclease, putative; n=1; Plasm...    33   6.2  
UniRef50_Q8SV02 Cluster: Putative uncharacterized protein ECU07_...    33   8.2  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 41.5 bits (93), Expect = 0.023
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = -2

Query: 623 WYLPARTHKRSYHQYTSQY 567
           WYLPARTHKRSYH+Y   Y
Sbjct: 572 WYLPARTHKRSYHRYQCSY 590


>UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;
           n=1; Kineococcus radiotolerans SRS30216|Rep:
           Transcriptional regulator, TetR family - Kineococcus
           radiotolerans SRS30216
          Length = 222

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = -3

Query: 691 LQRLPRPSNRNALLLHGTNRQGGGTYPRGLTRG 593
           L  LPRP  R A    GT R GGGT P G +RG
Sbjct: 189 LDGLPRPPGRAAGPARGTTRSGGGTRPGGGSRG 221


>UniRef50_P68579 Cluster: SPBc2 prophage-derived
           sublancin-168-processing and transport ATP- binding
           protein sunT; n=2; root|Rep: SPBc2 prophage-derived
           sublancin-168-processing and transport ATP- binding
           protein sunT - Bacillus subtilis
          Length = 705

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -2

Query: 341 VTEKYKDEKKNAYFFLNVFFFTKLALIIVRL 249
           + EK KD+KK++YFF ++ F  KL + ++ L
Sbjct: 143 IPEKEKDQKKHSYFFKDILFRNKLIVFVILL 173


>UniRef50_Q7RLT2 Cluster: Putative uncharacterized protein PY02458;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY02458 - Plasmodium yoelii yoelii
          Length = 1254

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 440 RQVLKSNRLLRLDHDT*CIFFCYHENFRILLFI 538
           + +LKS RL++ + +  CIFF Y ENF  + ++
Sbjct: 418 KNMLKSGRLVKYEQEYTCIFFKYVENFEFIFYL 450


>UniRef50_Q8IKX8 Cluster: 3'-5' exonuclease, putative; n=1;
           Plasmodium falciparum 3D7|Rep: 3'-5' exonuclease,
           putative - Plasmodium falciparum (isolate 3D7)
          Length = 1136

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 412 NKTKNFINAFAKTKKSFNNVLY*QLQRNIKTKK 314
           N  KN+ N   K  K +NN++  ++Q+NIK KK
Sbjct: 288 NNVKNYHNNNIKENKPYNNIMNAKMQKNIKQKK 320


>UniRef50_Q8SV02 Cluster: Putative uncharacterized protein
           ECU07_0900; n=1; Encephalitozoon cuniculi|Rep: Putative
           uncharacterized protein ECU07_0900 - Encephalitozoon
           cuniculi
          Length = 372

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 670 SNRNALLLHGTNRQGGGTYPRGL 602
           + RNALL+HG N  G  TY RGL
Sbjct: 112 TKRNALLVHGFNGSGNSTYMRGL 134


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,265,078
Number of Sequences: 1657284
Number of extensions: 11894632
Number of successful extensions: 25597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25583
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)