Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0102.Seq
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103...    29   5.6  
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354     28   7.4  

>05_03_0389 -
           13409848-13409964,13410049-13410114,13410209-13410325,
           13410822-13410893,13410979-13411258,13411528-13411730,
           13412230-13412316,13412705-13412758,13413042-13413221,
           13414402-13414576,13414628-13414918,13414923-13415344
          Length = 687

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 45  FFYVNRA*YKNVSDYCKETIVSKFFLLRDRTIPALIASNYQSYY 176
           +FY NR    N  D C    +SKFFL+          S++Q +Y
Sbjct: 93  WFYTNRV-AVNTWDKCSTAFLSKFFLMGKTNALRRRISSFQEFY 135


>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
          Length = 847

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 620 YLPARTHKRSYHQYTSQYIF-TSHYI 546
           YLPA  H+R YH +   Y++   HY+
Sbjct: 127 YLPADLHRRFYHGFCKHYLWPLLHYL 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,396,605
Number of Sequences: 37544
Number of extensions: 326487
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)