Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0101.Seq
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    27   2.0  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   6.2  

>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 211 GEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRKG 312
           G+GA  ++++ +K+DK K EP       VPTR G
Sbjct: 13  GDGANGDNKKDQKKDKPKYEP------PVPTRTG 40


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 508 DDRRTRVSVAAELLPYFLRYRS 443
           ++ R R+  +AELL Y+L +RS
Sbjct: 133 ENNRKRILSSAELLRYYLEFRS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,696
Number of Sequences: 5004
Number of extensions: 31518
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)