Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0101.Seq
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385...    30   1.2  
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66...    29   3.7  
11_06_0549 + 24868344-24868930,24869740-24869957,24870018-248701...    28   6.4  
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178     28   6.4  
10_01_0236 + 2486371-2486952                                           27   8.5  

>10_08_0452 -
           18038182-18038253,18038338-18038415,18038502-18038579,
           18039112-18039168,18039276-18039349,18039424-18039495,
           18039609-18039670,18039861-18039962,18040378-18040490,
           18040809-18040940,18041156-18041243,18041617-18041711,
           18041793-18042023,18042567-18042680,18042765-18042866,
           18043091-18043207,18043301-18044146
          Length = 810

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 178 RSS*CVKSARAGEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXT-QNVKSQDIKS 354
           RSS   KS   GEG + E   +  + + K +P P K  T+  +   K + + V+ +  +S
Sbjct: 73  RSSSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRS 132

Query: 355 GEQQKGKGPA 384
               K K  A
Sbjct: 133 PSPTKAKALA 142


>08_01_0091 +
           664913-664985,665281-665576,667197-667311,667901-667971
          Length = 184

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 103 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKRDKGKPEPK 276
           Q+   G FL  G  E+ RS      +    + SA  R GE A+ +D+ +R   +GK    
Sbjct: 20  QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79

Query: 277 PAKGVTVPT 303
              G T PT
Sbjct: 80  SNPGET-PT 87


>11_06_0549 +
           24868344-24868930,24869740-24869957,24870018-24870175,
           24870202-24870633,24870717-24871064
          Length = 580

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 220 AQKEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGEQQKGKG 378
           A  E    R+R  G+    PAKGVT P R+G +   + +    + G    G G
Sbjct: 2   AATEAGGQRRRGSGRRGASPAKGVT-PERRGERGEASQRLGSEREGATAAGDG 53


>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
          Length = 1122

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = +1

Query: 223 QKEDQRSRKR----DKGKPEPKPAKGVTVP 300
           Q++  RSRKR    DK +PEP P K V VP
Sbjct: 103 QRQSSRSRKRKRKGDKKEPEPSPIK-VPVP 131


>10_01_0236 + 2486371-2486952
          Length = 193

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 196 KSARAGEGAQKEDQRSRKRDKGKPEPKPA 282
           ++ R+GEG  +  QR R  ++  P P PA
Sbjct: 112 RTPRSGEGQARAPQRRRPLERAAPLPPPA 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,618,612
Number of Sequences: 37544
Number of extensions: 240518
Number of successful extensions: 778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)