Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0101.Seq
         (592 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    31   0.021
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    29   0.15 
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          25   2.4  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   5.6  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    23   7.4  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   9.8  

>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 31.5 bits (68), Expect = 0.021
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 208 AGEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRK-GIKXTQNVKSQDIKSGEQQKGKG 378
           A EGA K  ++    D+G+P PKP + +T  T++  +K  + V +  ++   QQ G G
Sbjct: 130 AAEGAPKPQRKLS--DRGEPPPKPDRRITTTTQQIVVKLPETVANVSLE--HQQSGAG 183


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 402 ITIDRACRSLTLLLFSTFDVLRLHILSXLNALPGGNGYAFSGL 274
           +   + C  + ++LFST+D + L+    LN + G NG   S +
Sbjct: 4   VITSKVCALIFIILFSTYDSVVLYPEEYLNIILGPNGTGKSAI 46


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 208 AGEGAQKEDQRSRKRDKGKPEPKPAKGV-TVPTRKG 312
           A E  +K+ Q  RK+D+ +  P PA  V TV    G
Sbjct: 297 AVEALKKKYQEQRKKDRPEAAPAPAPTVITVDRNNG 332


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 12/56 (21%), Positives = 25/56 (44%)
 Frame = +1

Query: 217 GAQKEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGEQQKGKGPA 384
           G Q+   R+R  ++ +   +         ++ IK +++   QD+    +  G GPA
Sbjct: 303 GMQRRFNRARTEEQREERRQIKSDARAALQQAIKLSKDQHKQDLPEQLEPHGFGPA 358


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 342 LRLHILSXLNALPGGNGYAFSGLGFR 265
           LRLH +  ++    G GYAF    F+
Sbjct: 774 LRLHWVEFMSKFYEGLGYAFKPFSFK 799


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 579 LVDRDALHRPGCCR*NCGAR 520
           LV + A  R G C  NCG R
Sbjct: 164 LVSQTATRRLGLCCTNCGTR 183


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,419
Number of Sequences: 2352
Number of extensions: 8290
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56768445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)