Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0101.Seq
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81033-1|CAB02724.1|  199|Caenorhabditis elegans Hypothetical pr...    37   0.009
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      36   0.016
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    36   0.016
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    29   2.5  
U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U80032-5|AAB53878.1|  552|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z81033-1|CAB02724.1|  199|Caenorhabditis elegans Hypothetical
           protein C03C11.1 protein.
          Length = 199

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +1

Query: 211 GEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRK-GIKXTQNVKSQDIKSGE----QQKGK 375
           G GA  +D +S K+DK   +PKP  G   P+ K  +  T +   Q +   +    Q+KGK
Sbjct: 52  GGGATGDDGKSDKKDKSSNDPKPEGGPKAPSDKNAVAGTHDPNYQTLAGVDGNVFQEKGK 111

Query: 376 GPA 384
            PA
Sbjct: 112 APA 114


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = +1

Query: 196  KSARAGEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGEQQKGK 375
            K+ R  +  +KE +R R+RD+ + E K +     P++K     ++ K +D +  E++KGK
Sbjct: 1114 KAQREKDKKEKERERRRQRDRDRTEQKKSDREKEPSKKRKLEKKDEKEKDRREPERKKGK 1173


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = +1

Query: 196  KSARAGEGAQKEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGEQQKGK 375
            K+ R  +  +KE +R R+RD+ + E K +     P++K     ++ K +D +  E++KGK
Sbjct: 1114 KAQREKDKKEKERERRRQRDRDRTEQKKSDREKEPSKKRKLEKKDEKEKDRREPERKKGK 1173


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 205 RAGEGAQKEDQRSRKRDKGKPEPKPAK 285
           +A EG +K+D++  KRD+ K E +  K
Sbjct: 883 KAAEGEEKKDEKEEKRDEKKDEKREEK 909


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 205 RAGEGAQKEDQRSRKRDKGKPEPKPAK 285
           +A EG +K+D++  KRD+ K E +  K
Sbjct: 883 KAAEGEEKKDEKEEKRDEKKDEKREEK 909


>U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical
           protein T23B3.5 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 223 QKEDQRSRKRDKGKPEPK-PAKGVTVPTRKGIKXTQNVKSQDIKSGEQQK 369
           +K+D++  K+D+ K E K   K  +  ++K  K  ++ KS+  K  E++K
Sbjct: 130 KKDDKKDEKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKKSKREKKDEEKK 179


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
            protein Y73F8A.5 protein.
          Length = 1019

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 419  RVVVKIGRRTVPQKIRKELRGHRDASSA 502
            RV+   GRR+ P   R  LR HR+  +A
Sbjct: 983  RVIFSKGRRSAPNNSRTTLRDHRENDNA 1010


>Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical
           protein W01B6.5 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 256 KGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGEQQKGKGPA 384
           KG P+ +P  G T     G K   N  S D+K   Q    GP+
Sbjct: 48  KGTPKERPNCGKTKNETSGKKLRSNDVSPDVKDRLQLSEHGPS 90


>U80032-5|AAB53878.1|  552|Caenorhabditis elegans Hypothetical
           protein C32E12.1 protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 226 KEDQRSRKRDKGKPEPKPAKGVTVPTRKGIKX-TQNVKSQDIKSGEQQKGK 375
           K++++ +K    KP+ K +K       K  +  +++VK +D+KS +++K K
Sbjct: 72  KKNKKDKKSKDKKPKDKKSKEKKPKAAKSKEVKSKDVKPKDVKSKDEKKKK 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,013,250
Number of Sequences: 27780
Number of extensions: 190425
Number of successful extensions: 624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)