Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0101.Seq
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             31   0.43 
At1g43970.1 68414.m05072 hypothetical protein                          29   2.3  
At4g01090.1 68417.m00147 extra-large G-protein-related contains ...    28   5.4  
At5g54020.1 68418.m06719 expressed protein                             27   7.1  
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    27   9.4  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 214 EGAQKEDQRSRKRDKG-KPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGEQQK 369
           E  Q   + S K +KG K E K AK V     K +  T+N      +SGE  K
Sbjct: 773 ENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNK 825


>At1g43970.1 68414.m05072 hypothetical protein
          Length = 239

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 244 RKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDIKSGEQQKGKG 378
           R R    P      GV+  T +  K  ++  S++  S +QQKGKG
Sbjct: 67  RNRQNSVPMSTEVPGVSSVTSRLAKRKRDTPSEEFLSQKQQKGKG 111


>At4g01090.1 68417.m00147 extra-large G-protein-related contains
           weak similarity to extra-large G-protein [Arabidopsis
           thaliana] gi|3201682|gb|AAC19353
          Length = 714

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 196 KSARAGEGAQKEDQRSRKRDKGKPEPKPA 282
           +S+ + E  QKE +  R+R KG   P+PA
Sbjct: 442 RSSNSSEQQQKEVKSVRRRGKGSKAPEPA 470


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 33  DKMSPY*CAESNPITSKYCVIKSSR 107
           D  +PY C E N +  KYC+ K  R
Sbjct: 154 DDRNPYVCLECNLMVHKYCIEKLPR 178


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 241 SRKRDKGKPEPKPAKGVTVPTRKGIKXTQNVKSQDI 348
           S  R K KPEPKP +      R  +K  + V S+++
Sbjct: 50  SSSRTKQKPEPKPEQETNYQKRTKLKALKLVYSREL 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,490,136
Number of Sequences: 28952
Number of extensions: 180800
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)