Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0100.Seq
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   0.39 
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   2.7  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   2.7  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    24   8.3  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 292 SPVLDHAICKSIQFIKINDFGREALRRLVLI 200
           SPVLD  +C S    ++NDF +  ++  +L+
Sbjct: 103 SPVLDQKVCNSDSLSELNDFTKSLIQPSMLM 133


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 269 LQKYPIHQN*RLRTRGPPSIGFDLIKALIP 180
           ++ Y IH +  L  +  PS GF +I++L+P
Sbjct: 397 IKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 218 EGLASEVVNFDELDTFADRMVKYRRQ 295
           E   ++ ++FDELD FA+  ++ +RQ
Sbjct: 365 ESHVNKGIDFDELDNFAEEELQKQRQ 390


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 85  IYQFWFLRSYSVTWITVVILALIHALRTLTSDGMS 189
           ++ FWF+ +  V        A++H+LR    +GMS
Sbjct: 751 LFGFWFIATCVVLVAMEGTSAMLHSLRLHWVEGMS 785


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,199
Number of Sequences: 5004
Number of extensions: 25805
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)