Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0100.Seq
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0834 + 32302065-32302143,32303136-32303275,32303371-323034...    29   0.85 
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913...    28   2.0  
01_04_0122 - 16329370-16329478,16329636-16329639,16329872-163299...    27   4.5  
05_05_0214 + 23319507-23321540                                         27   6.0  
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644...    27   6.0  

>01_06_0834 +
           32302065-32302143,32303136-32303275,32303371-32303436,
           32303867-32303950,32304532-32304699,32305061-32305126,
           32306027-32306452
          Length = 342

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 289 PVLDHAICKSIQFIKINDFGREALRRLVLI**KHSSHH 176
           P L HA+  S+ F+KI D G +AL R +L    H   H
Sbjct: 31  PALTHALPSSLIFVKIED-GADALLRNILAFRSHQIFH 67


>06_01_1109 +
           9127761-9127976,9128084-9128290,9129539-9129753,
           9131665-9131904,9133372-9133570,9134666-9134992,
           9135977-9136070,9136307-9136320
          Length = 503

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 91  QFWFLRSYSVTWITVVILALIHALRTLTSDGMSAFIRSKPID 216
           Q  FL + + T I  +  A+IH L  L++DG+   ++ + +D
Sbjct: 367 QLIFLVAENTTGIGALERAIIHQLNKLSADGLEKLMKDEQLD 408


>01_04_0122 -
           16329370-16329478,16329636-16329639,16329872-16329965,
           16330409-16330478,16330815-16330960
          Length = 140

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 231 PKSLILMNWILLQIAWSSTG 290
           PK+ + M W++L + W++ G
Sbjct: 81  PKAFVAMGWLVLVVTWAAMG 100


>05_05_0214 + 23319507-23321540
          Length = 677

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -3

Query: 276 MRSAKVSNSSKLTTSDARPSVDWF*SNKSTHPITGQ 169
           MR   VS S +  T D      WF S KST P TGQ
Sbjct: 288 MRDPVVSASGQ--TYDRESITRWFGSGKSTCPKTGQ 321


>05_03_0449 -
           14161812-14162902,14163121-14163153,14164248-14164457,
           14166348-14167011,14167129-14167287,14167449-14167563,
           14167672-14167867,14167965-14168286,14168695-14168865,
           14169486-14169495,14169932-14170285,14172429-14172553
          Length = 1149

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = -1

Query: 230 TRGPPSIGFDLIKALIPSLVRVLSACISARITTVIQVTE*DLRN 99
           ++GPP+  +++++A+   L  VL+AC   R+++   +T   LRN
Sbjct: 668 SQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLIT--GLRN 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,444,621
Number of Sequences: 37544
Number of extensions: 162715
Number of successful extensions: 334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)