Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0100.Seq
         (362 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.003
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 31   0.28 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 31   0.28 
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.49 
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)                 27   6.0  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 19/27 (70%), Positives = 19/27 (70%)
 Frame = +2

Query: 2   PVVICLYQRLSHACLSASRIKAIPRMA 82
           PVVICL QRLSHACLS S      RMA
Sbjct: 135 PVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 19/27 (70%), Positives = 19/27 (70%)
 Frame = +2

Query: 2   PVVICLYQRLSHACLSASRIKAIPRMA 82
           PVVICL QRLSHACLS S      RMA
Sbjct: 111 PVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 9   LYACIKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  C+ D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 9    LYACIKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
            L  C+ D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 NWILLQIAWSSTGDRSFKCLP 314
           NW  +Q+AW + G+  FK +P
Sbjct: 292 NWSRVQVAWKTVGEEKFKIIP 312


>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
          Length = 1382

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 282 LTMRSAKVSNSSKLTTSDARPSVDWF*SNKSTHPITGQ-SSECMY 151
           LT +S ++  +SKL  +  RPS D    +    P T Q S +C++
Sbjct: 52  LTQKSGELQRASKLARARQRPSTDIKVDSAQRKPRTDQYSHKCVH 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,097,118
Number of Sequences: 59808
Number of extensions: 193783
Number of successful extensions: 341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)