Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0100.Seq
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   1.7  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    26   9.3  
U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical pr...    26   9.3  
U14635-6|AAP86617.1|  517|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 67  DTANGSIYQFWFLRSYSVTWITVVILALIHALRTL 171
           D+  G++   WF +++SV WI +V+ + I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 94  TDILSHSRYRLNTACTETC 38
           T++L H+R+ L  AC E C
Sbjct: 245 TEVLKHARFCLGLACCERC 263


>AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.9 protein.
          Length = 421

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 286 VLDHAICKSIQFIKINDFGREALRR 212
           +LD  +CK  +F+K ND   E +R+
Sbjct: 165 LLDFGLCKRPRFVKKNDEAEEQMRK 189


>Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical
           protein C15A11.7 protein.
          Length = 396

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 194 LLDQNQSTEGLASEVVNFDELDTFADR-MVKYRR 292
           LL+  Q  E  A ++ NF    TFAD  ++KYR+
Sbjct: 20  LLEGQQLDEKHAEKITNFPVNPTFADYILIKYRK 53


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 307 HLKDLSPVLDHAICKSIQFIK-IND 236
           HLK+L   L+  + KS+Q+I+ +ND
Sbjct: 17  HLKELKLQLEQTVLKSVQYIEDVND 41


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 109 SYSVTWITVVILALIHALRTLTSDGMS 189
           SY+V+WIT       + +R + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical
           protein C27H5.4a protein.
          Length = 521

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 58  Y*GDTANGSIYQFWFLRSYSVTWITVV-ILALIHALRTLTSDGMSAF 195
           Y G     S   FWF  S S+ W+T + +L  +    TL +  +SA+
Sbjct: 89  YAGPVFAASFLLFWFPWSTSIGWVTALHLLVSLFIYDTLLTLVLSAY 135


>U14635-6|AAP86617.1|  517|Caenorhabditis elegans Hypothetical
           protein C27H5.4b protein.
          Length = 517

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 58  Y*GDTANGSIYQFWFLRSYSVTWITVV-ILALIHALRTLTSDGMSAF 195
           Y G     S   FWF  S S+ W+T + +L  +    TL +  +SA+
Sbjct: 85  YAGPVFAASFLLFWFPWSTSIGWVTALHLLVSLFIYDTLLTLVLSAY 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,065,717
Number of Sequences: 27780
Number of extensions: 140481
Number of successful extensions: 325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)