Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0100.Seq
         (362 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    33   0.043
At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar ...    27   3.7  
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi...    26   6.5  
At3g06510.1 68416.m00755 glycosyl hydrolase family 1 protein sim...    26   6.5  
At1g55640.1 68414.m06369 prenylated rab acceptor (PRA1) family p...    26   8.6  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 267 AKVSNSSKLTTSDARPSVDWF*SNKSTHPITGQSSE 160
           A VS+S     S  RPS+DWF  N+S +  +  SSE
Sbjct: 219 ALVSDSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
           Eucalyptus gunnii [GI:2058311]
          Length = 321

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 218 PSIGFDLIKALIPSLVRVLSACISARITTVIQVT 117
           P+   DLI   +   + VL AC+ A++  V+ V+
Sbjct: 94  PNPEVDLIAPAVDGTLNVLKACVEAKVKRVVYVS 127


>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
           to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 519

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 227 RGPPSIGFDLIKALIPSLVRVL 162
           RG PS  FDL+K ++P L R++
Sbjct: 228 RGKPSPPFDLVKHVLPVLKRLV 249


>At3g06510.1 68416.m00755 glycosyl hydrolase family 1 protein
           similar to Beta-galactosidase (SP:P22498) [Sulfolobus
           solfataricus}; almost identical to beta-glucosidase
           GB:AAF23823 GI:6685165 from [Arabidopsis thaliana]
          Length = 622

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 289 PVLDHAICKSIQFIKINDFGREAL 218
           P +D +IC+ + FI IN +G+EA+
Sbjct: 360 PYID-SICEKLDFIGINYYGQEAV 382


>At1g55640.1 68414.m06369 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor 1
           (PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
           PF03208: Prenylated rab acceptor (PRA1)
          Length = 187

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 79  GSIYQFWFLRSYS---VTWITVVILALIHALRTLTSDGMSAFIRSKPI 213
           GS++  WF+ S     +  +T V+L L+HA+   + D    F++ K +
Sbjct: 133 GSLWALWFINSLQCLILGVVTSVLLCLVHAIIRNSDD---LFVQEKDV 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,636,154
Number of Sequences: 28952
Number of extensions: 133042
Number of successful extensions: 298
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)