Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0099.Seq
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    30   0.38 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.5  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    26   4.7  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    26   4.7  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   6.1  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 286 SWIA*WTNASAHMTLFSVMYNVAVPNS*SFMRSFVDGDCSNTPSAGSA 143
           +W   WT     M  F   YN+A+PN+ ++ RS V    +   +A  A
Sbjct: 318 TWDNLWTQDPPPMQSFRPNYNIAIPNAPAYYRSNVTAAAAANAAAAFA 365


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 343  WFALYRM*RYAWIE*IDGRSWIA*WTNASAH---MTLFSVMYNVAV 215
            WF +    +  W+  + GRSW   W+  + H   M L  +++ VA+
Sbjct: 2187 WFFISVFLQNYWMSSVYGRSWAFMWSAHNVHKWAMFLLVILFYVAI 2232


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 272 SGNPAPTINLLYPSISLHAIQREPSPALYM-VLNYELRLPELSQQAG 409
           SG P+   N L  + S+ + ++EPS  L++  L++E    +L +  G
Sbjct: 203 SGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFG 249


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 98  LNILKYNNGSCVK*FC*AGRWCVATVS 178
           ++I++YN GSCV     AG+ CVA  S
Sbjct: 1   MSIMEYNGGSCV---AMAGKNCVAIAS 24


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -2

Query: 705 RVVAVTGPGAEPHASQRG 652
           RVV VTGPG   HA Q G
Sbjct: 200 RVVDVTGPGMFVHALQNG 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,790
Number of Sequences: 5004
Number of extensions: 47086
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)