Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0099.Seq
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1105 - 27634787-27636025                                         30   1.6  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    29   2.8  
07_03_0213 - 15244299-15246311                                         29   2.8  
11_06_0264 - 21785450-21786928                                         29   3.7  
03_05_0427 + 24142474-24142502,24143679-24143739,24146678-241470...    28   6.4  
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986           28   8.5  
04_01_0509 + 6668208-6668653,6669776-6669779                           28   8.5  

>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 533 NCTRIRPMRSRMMTHTWTEKSLMKGRRSLKMLRRARPTPPPRC 661
           N  RIR +RS     T +  S   GR   +  RR  P PPPRC
Sbjct: 264 NPPRIRLVRSSHRHSTSSSSSSRAGRSPAR--RRPSPPPPPRC 304


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 602 KGRRSLK-MLRRARPTPPPRCDA*GSAPGPVTATTRT 709
           KG RS +   R  +P+PPPR  A  SA G   ATT T
Sbjct: 28  KGSRSKRGSARPLKPSPPPRPSASSSAAGGGGATTFT 64


>07_03_0213 - 15244299-15246311
          Length = 670

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 162 VLLQSPSTKLLINDQELGTATLYITENNVIWAEALVHQAIQLRPSIYSIQAYL 320
           VL  +P   L +  QE  T T +  E+N +W   L+  A Q+  +IY +   L
Sbjct: 66  VLFWAPFLLLHLGGQE--TMTAFSMEDNTLWKRHLLSLATQMATAIYVVSKQL 116


>11_06_0264 - 21785450-21786928
          Length = 492

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 254 GGGVSPSGNPAPTINLLYPSISLHAIQREPSPALYMVL 367
           GGG + S +P+P    +  S S H     P P  Y+ +
Sbjct: 299 GGGAASSSSPSPVARTVLSSPSPHQYSSGPKPTQYLAV 336


>03_05_0427 +
           24142474-24142502,24143679-24143739,24146678-24147022,
           24147651-24147929,24149063-24149230
          Length = 293

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
 Frame = +2

Query: 608 RRSLKMLRRARP-TPPPR-CDA*GSAPGPV 691
           R+++ +L+RARP TPPP+  DA G+ P  V
Sbjct: 103 RQAVLLLQRARPSTPPPKQADAKGTRPDGV 132


>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
          Length = 700

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 222 TLYITENNVIWAEALVHQAIQLRPSIYSIQAYL 320
           T Y  E+N +W   L   A+Q+  ++Y I  Y+
Sbjct: 96  TAYALEDNTLWLRHLQTLAVQVLGAVYVIYTYI 128


>04_01_0509 + 6668208-6668653,6669776-6669779
          Length = 149

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 183 TKLLINDQELGTATLYITENNVIWAEALVHQAIQLRPSIYSIQAYLYMRYNANHPLPCT 359
           T+ LI D       +  T +N++W +     A+  R     +  Y Y    +  P+PCT
Sbjct: 83  TEYLIGDPPQHAEAIVDTGSNLVWTQCTDCLAVADRCFKQHLPLYNYSASRSAKPVPCT 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,413,438
Number of Sequences: 37544
Number of extensions: 339024
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)