Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0098.Seq
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   4.9  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   6.5  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   6.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    24   8.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    24   8.6  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       24   8.6  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 272 LPKPDPERPYILNKTFRKSHSNISKRSNI 186
           +PKP   +P   N  +   HS + +R NI
Sbjct: 535 IPKPLTPKPSDSNSLYPLPHSKVGRRKNI 563


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 257 GQAWVAGGGEVAAPGLDAYHCVISFTANHMYVTSSVFTSAHGWQPVDIVD 406
           G+AWV     +    L   +C+    AN   + +  FT A  W    +V+
Sbjct: 295 GEAWVVLIARMPNDFLPLVNCIAQVAANDTELEAIKFTFAFWWDLKQMVE 344


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 284 HHPQLPKPDPERPYILNKTFRKSHSNISKRSNIV 183
           H P  P P P RP I + +F +  S  S   NIV
Sbjct: 196 HIPAEPLPLPARPQISDLSFFRKPSLPSALQNIV 229


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 224 EMFYSICKDALGQAWVA 274
           E+F SI KD L Q W+A
Sbjct: 565 EVFQSISKDGLLQTWMA 581


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 347 TCDLQ*N**HSGTRPARVPRPHHPQLPKPDPERPYILN 234
           T D++ N   +G +   +P P  PQ P    ER   LN
Sbjct: 229 TQDVKSNSFENGEKQFSLPEPRRPQKPMRTTERKASLN 266


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +2

Query: 224 EMFYSICKDALGQAWVAGGGE--VAAP 298
           E+   IC+D     WV G G+  V AP
Sbjct: 22  ELICEICRDLYTSGWVTGTGDAIVIAP 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,948
Number of Sequences: 5004
Number of extensions: 30002
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)