Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0098.Seq
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0958 - 21804938-21805729,21805896-21806006,21806227-218064... 30 0.90
11_01_0805 - 7166265-7166759 29 1.2
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 29 1.6
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 29 2.1
05_03_0039 - 7621613-7622695 28 3.6
02_04_0615 - 24410124-24410290,24410592-24410623,24410717-244108... 28 3.6
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 28 3.6
10_01_0291 + 3010685-3010838,3010954-3011489 27 4.8
10_01_0290 + 2999775-2999928,3000281-3000816 27 4.8
10_01_0288 - 2992107-2992627,2992742-2992895 27 4.8
07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542... 27 6.3
07_03_0146 + 14389350-14390372 27 6.3
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 27 8.3
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 27 8.3
05_03_0289 - 11688733-11691342 27 8.3
>10_08_0958 -
21804938-21805729,21805896-21806006,21806227-21806437,
21807390-21807910
Length = 544
Score = 29.9 bits (64), Expect = 0.90
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -3
Query: 391 RLPTVSAREHTRCYVHVICSKTDNTVVRVQPG---CRDLTTPSYP 266
R P ++ R + C NT+V +Q G C +L PSYP
Sbjct: 218 RTPIQVYSDYMRSFRDTFCGYLGNTIVEIQVGLGPCGELRYPSYP 262
>11_01_0805 - 7166265-7166759
Length = 164
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 305 PARVPRPHHPQLPKPDPERPYIL 237
PA P PH P+LP PE P +L
Sbjct: 55 PAFKPTPHRPKLPTIRPEHPRLL 77
>07_03_0203 + 15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 194 NVLKYCYV---IFEMFYSICKDALGQAWVAGGGEVAAPGLDAYH 316
N LK C + I+ Y+I KD L + WVA G + G DA H
Sbjct: 921 NYLKTCLLYLGIYPTGYTIRKDDLVKQWVAEGFASSMHGQDAEH 964
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 105 LVEIFLEDDPYEQGSSQRHHCPFQFRTICDDFAS 4
L+ L+ E G + PF RT+CDD S
Sbjct: 490 LINEVLDQAKIESGKLELETVPFDLRTVCDDILS 523
>05_03_0039 - 7621613-7622695
Length = 360
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -2
Query: 305 PARVPRPHHPQLPKPDPE-RPY 243
P P+P H PKP+PE +PY
Sbjct: 134 PKPEPKPEHKPEPKPEPEPKPY 155
>02_04_0615 -
24410124-24410290,24410592-24410623,24410717-24410811,
24413636-24413706,24414278-24414410,24414488-24414551,
24414628-24414690,24414784-24414924,24415130-24415203,
24415346-24415470,24415545-24415686,24415775-24415777
Length = 369
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -3
Query: 388 LPTVSAREHTRCYVHVICSKTDNTVVRVQPGC---RDLTTPS 272
L V R HTR + H +CS V ++ G +D+ PS
Sbjct: 219 LVIVQKRHHTRIFPHTLCSNYTEQVAQIPSGTVIDQDICHPS 260
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 320 HSGTRPARVPRPHHPQLPKPDPERP 246
H RP P PH P+ P P P P
Sbjct: 114 HCPPRPPPPPPPHPPEDPPPHPPHP 138
>10_01_0291 + 3010685-3010838,3010954-3011489
Length = 229
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 305 PARVPRPHHPQLPKPDPERPYI 240
P P+P P+ PKP+PE P++
Sbjct: 159 PKPEPKPEPPK-PKPEPEHPFL 179
>10_01_0290 + 2999775-2999928,3000281-3000816
Length = 229
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 305 PARVPRPHHPQLPKPDPERPYI 240
P P+P P+ PKP+PE P++
Sbjct: 159 PKPEPKPEPPK-PKPEPEHPFL 179
>10_01_0288 - 2992107-2992627,2992742-2992895
Length = 224
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 305 PARVPRPHHPQLPKPDPERPYI 240
P P+P P+ PKP+PE P++
Sbjct: 159 PKPEPKPEPPK-PKPEPEHPFL 179
>07_03_0204 -
15150854-15151147,15152230-15153689,15154055-15154266,
15155123-15155275,15155569-15155630,15155733-15155785,
15156380-15156452,15156499-15156619,15156699-15156878,
15157333-15157391
Length = 888
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 293 PRPHHPQLPKPDPERPYILNKTFRKSHSNISKRSNIV 183
P P++P P D R + + + HS+ SK S ++
Sbjct: 337 PGPYYPPYPPVDDPRYHYSGRKSSRKHSSDSKESEVL 373
>07_03_0146 + 14389350-14390372
Length = 340
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -2
Query: 290 RPHHPQLPKPDPERPYILNKTFRK-SHSNISKRSN 189
+P P P PDP RP + FR N++K N
Sbjct: 219 QPIRPPSPPPDPPRPETVENWFRNIIRENLAKLRN 253
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +2
Query: 200 LKYCYVIFEMF---YSICKDALGQAWVAGG 280
LK C + + Y I KDAL +AWVA G
Sbjct: 1397 LKNCMLYLNKYPEGYKISKDALVKAWVAEG 1426
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 245 KDALGQAWVAGGGEVAAPGLD 307
+D G+ WVAGGG+ P L+
Sbjct: 243 EDICGRDWVAGGGDHGDPDLE 263
>05_03_0289 - 11688733-11691342
Length = 869
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 260 QAWVAGG--GEVAAPGLDAYHCVISFTANHMYVTSSVFTSAHGWQPV 394
+A V GG G AA G+ A C++ + + V ++ + + GW PV
Sbjct: 440 KATVIGGAAGGAAAFGIVAAICIVVYQSKKRKVLNNSASHSSGWLPV 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,798
Number of Sequences: 37544
Number of extensions: 215122
Number of successful extensions: 1009
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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