Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0098.Seq
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)         31   0.40 
SB_47472| Best HMM Match : zf-CXXC (HMM E-Value=5.9)                   31   0.53 
SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9)             29   2.1  
SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)          28   2.8  
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)               28   2.8  
SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)              28   2.8  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   6.5  
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             27   6.5  
SB_26476| Best HMM Match : TFIIS_C (HMM E-Value=3.6)                   27   6.5  
SB_57351| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_34032| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)                 27   8.6  
SB_23581| Best HMM Match : HEAT (HMM E-Value=6.1e-11)                  27   8.6  
SB_14945| Best HMM Match : Herpes_US9 (HMM E-Value=1.7)                27   8.6  
SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)                   27   8.6  

>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
          Length = 653

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 30  EIEMGSGGAGWSLAHRDRPQEISQLIKL*AEHILRESDR 146
           E ++G+G +G SLA    P+++   ++  AEH  RE+ R
Sbjct: 576 ETDLGTGNSGPSLAVLSNPRDLDVSLEFIAEHSRREAQR 614


>SB_47472| Best HMM Match : zf-CXXC (HMM E-Value=5.9)
          Length = 433

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 424 PSVTRAINNVNRLPTVSAREHTRCYVHVICSKTDNTVVRVQPGC 293
           PS T  +N V R   V ++  TRC VHV C +  N  ++  P C
Sbjct: 232 PSCT--VNGVRRA-NVDSKTVTRCTVHVHCVRRANVDLKTAPRC 272


>SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9)
          Length = 356

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 334 SKTDNTVVRVQPG-CRDLTTPSYPSLTQSVLTY*IKH 227
           SK    V    PG C+ LT+P YP L   VL+  +KH
Sbjct: 24  SKIPYPVKAPAPGTCKVLTSPPYPKLLGQVLSRELKH 60


>SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)
          Length = 330

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 320 HSGTRPARVPRPHHPQLPKPDPERPYILNKTFRKSHSNISKRSNI 186
           H  T P +  RP  P+   P P+ P    K  R   +  S +SN+
Sbjct: 3   HRPTSPRKESRPPSPRKTSPRPQSPKKEPKQTRSVETETSPQSNV 47


>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
          Length = 976

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 320 HSGTRPARVPRPHHPQLPKPDPERPYILNKTFRKSHSNISKRSNI 186
           H  T P +  RP  P+   P P+ P    K  R   +  S +SN+
Sbjct: 441 HRPTSPRKESRPPSPRKTSPRPQSPKKEPKQTRSVETETSPQSNV 485


>SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)
          Length = 295

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 302 LDAYHCVISFTANHMYVTSSVFTSAHGWQPVDIV 403
           +D++    SFT+ H + +   FTS+H   P D V
Sbjct: 244 IDSFTSGHSFTSGHSFTSGHSFTSSHSLTPSDDV 277


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 316  LCYQFYCKSH--VRNIECVHERSRLAAC*HC 402
            LC + +C+     +++  VHE+ R   C HC
Sbjct: 2629 LCSKMFCRPEYVAKHVSMVHEKERPYRCIHC 2659



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 316  LCYQFYCKSH--VRNIECVHERSRLAAC*HC 402
            LC + +C+     +++  VHE+ R   C HC
Sbjct: 3759 LCSKMFCRPEYVAKHVSMVHEKERPYRCIHC 3789


>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 382  TVSAREHTRCYVHVICSKTDNT 317
            TV+ R    CY  +IC+K D+T
Sbjct: 997  TVAQRSKDDCYAKLICNKADST 1018


>SB_26476| Best HMM Match : TFIIS_C (HMM E-Value=3.6)
          Length = 256

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 343 HVRNIECVHERSRLAAC*HC 402
           HVR   C+   SR  AC HC
Sbjct: 74  HVRRTSCIFMSSRRVACNHC 93


>SB_57351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +3

Query: 36  EMGSGGAG-----WSLAHRDRPQEISQLIKL*AEHI 128
           +MG GG G     W + HRD P E++ L K+ A +I
Sbjct: 461 QMGGGGGGASYCPWGIPHRDPPLEVT-LSKIEAIYI 495


>SB_34032| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)
          Length = 673

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 304 QPGCRDLTTPSYPSLTQSVLT 242
           +P CRDL+ P+Y  L   V T
Sbjct: 411 RPNCRDLSLPNYDQLKTGVAT 431


>SB_23581| Best HMM Match : HEAT (HMM E-Value=6.1e-11)
          Length = 554

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 286 LTTPSYPSLTQSVLTY*IKHFENHIAIFQNVLISF 182
           LT P+YP +   VL+   + F+ H+A  +N+   F
Sbjct: 298 LTFPTYPDIRHCVLSSLDERFDAHLAQAENLAALF 332


>SB_14945| Best HMM Match : Herpes_US9 (HMM E-Value=1.7)
          Length = 292

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +3

Query: 36  EMGSGGAG-----WSLAHRDRPQEISQLIKL*AEHI 128
           +MG GG G     W + HRD P E++ L K+ A +I
Sbjct: 117 QMGGGGGGASYCPWGIPHRDPPLEVT-LSKIEAIYI 151


>SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)
          Length = 691

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 328 TDNTVVRVQPGCRDLTTPSYPSLTQSVLTY*IKH 227
           TDN V  V   CR L  P  P +  S   +  +H
Sbjct: 26  TDNEVALVYKSCRTLDAPPQPEVPWSAFIHIYRH 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,641,289
Number of Sequences: 59808
Number of extensions: 246542
Number of successful extensions: 790
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)