Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0098.Seq
(426 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64859-1|AAC69092.2| 468|Caenorhabditis elegans Hypothetical pr... 29 1.8
U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 28 3.2
AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeri... 27 4.3
AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein, su... 27 4.3
AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alp... 27 4.3
AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s... 27 4.3
U58735-3|AAC48143.1| 337|Caenorhabditis elegans Hypothetical pr... 27 5.6
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 27 5.6
Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical pr... 27 7.4
AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core alpha-6-... 27 7.4
AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl trans... 27 7.4
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z81095-3|CAB03159.2| 494|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z36719-4|CAA85315.2| 513|Caenorhabditis elegans Hypothetical pr... 26 9.8
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 26 9.8
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 26 9.8
>U64859-1|AAC69092.2| 468|Caenorhabditis elegans Hypothetical
protein R09F10.3 protein.
Length = 468
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 424 PSVTRAINNVNRLPTVSAREHTRCYVHV 341
P I+N+N + T+ +EHT C++++
Sbjct: 204 PKALPPIDNINLMRTLYTQEHTMCHINI 231
>U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical
protein F26A1.11 protein.
Length = 239
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -2
Query: 308 RPARVPRPHHPQLPKPD-PERP 246
RP R P P PQ P P P+RP
Sbjct: 35 RPPRPPSPSRPQRPPPSRPQRP 56
>AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 375
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 391 RLPTVSAREHTRCYVHVICSKTDNTVVRVQPGCRDL 284
R+ T ++ CY H C+ + RV CRD+
Sbjct: 328 RISTANSDGRHHCYPHFTCAVDTENIRRVFNDCRDI 363
>AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein,
subunit alpha protein 1 protein.
Length = 375
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 391 RLPTVSAREHTRCYVHVICSKTDNTVVRVQPGCRDL 284
R+ T ++ CY H C+ + RV CRD+
Sbjct: 328 RISTANSDGRHHCYPHFTCAVDTENIRRVFNDCRDI 363
>AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alpha
subunit protein.
Length = 375
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 391 RLPTVSAREHTRCYVHVICSKTDNTVVRVQPGCRDL 284
R+ T ++ CY H C+ + RV CRD+
Sbjct: 328 RISTANSDGRHHCYPHFTCAVDTENIRRVFNDCRDI 363
>AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s)
subunit protein.
Length = 375
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 391 RLPTVSAREHTRCYVHVICSKTDNTVVRVQPGCRDL 284
R+ T ++ CY H C+ + RV CRD+
Sbjct: 328 RISTANSDGRHHCYPHFTCAVDTENIRRVFNDCRDI 363
>U58735-3|AAC48143.1| 337|Caenorhabditis elegans Hypothetical
protein F20B4.2 protein.
Length = 337
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 424 PSVTRA--INNVNRLPTVSAREHTRCYVHVIC 335
PS+ + N+ N L T + + +CY+H +C
Sbjct: 114 PSIAKVHRTNHANELRTARFKANEKCYLHSVC 145
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 317 SGTRPARVPRPHHPQLPKP 261
S P + P+ HHPQLP P
Sbjct: 340 SSAPPFQHPQQHHPQLPPP 358
>Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical
protein F21H7.4 protein.
Length = 282
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = -2
Query: 308 RPARVP-RPHHPQLPKPDPE 252
RP R P RPH P P P PE
Sbjct: 82 RPHRPPHRPHRPPRPPPRPE 101
>AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core
alpha-6-fucosyltransferase protein.
Length = 559
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 293 PRPHHPQLPKPDPERPYI 240
P P +P LPKP+P + I
Sbjct: 81 PNPENPSLPKPEPVKEII 98
>AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl
transferase protein 8 protein.
Length = 559
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 293 PRPHHPQLPKPDPERPYI 240
P P +P LPKP+P + I
Sbjct: 81 PNPENPSLPKPEPVKEII 98
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 394 NRLPTVSAREHTRCYVHVICSKTDNTVV---RVQPGCRDLTTPSYPS 263
N LPT S + + ++C + QP C+D +TP+ P+
Sbjct: 63 NVLPTFSLQRELNPTIAMVCGANEQYSACFSSCQPSCQDPSTPACPA 109
>Z81095-3|CAB03159.2| 494|Caenorhabditis elegans Hypothetical
protein F59F4.3 protein.
Length = 494
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 311 TRPARVPRPHHPQLPKPDPERPYIL 237
T P R PRP P+ +PD + ++
Sbjct: 185 TTPLRPPRPSRPKFEEPDDDEDEVI 209
>Z36719-4|CAA85315.2| 513|Caenorhabditis elegans Hypothetical
protein C06C3.8 protein.
Length = 513
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Frame = -2
Query: 293 PRPHHPQ-LPKPDPER 249
P P+ P+ LPKPDPER
Sbjct: 217 PCPYPPEELPKPDPER 232
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 367 EHTRCYVH--VICSKTDNTVVRVQPGCRDLTTPSYPSLTQSVL 245
+H YV +CSK + P D TTP YP +T +L
Sbjct: 177 DHPSLYVEGCSMCSKPSTVTLPSNPVI-DYTTPKYPFITSPLL 218
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 308 RPARVPRPHHPQLPKPDPERPYI 240
RP P+P PQ P+P P++PYI
Sbjct: 2038 RPQPQPQPQ-PQ-PQPQPQQPYI 2058
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,354,057
Number of Sequences: 27780
Number of extensions: 179104
Number of successful extensions: 657
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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