Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0098.Seq
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   3.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 15   HHRLFEIEMGSGGAGWSLAHRDRP 86
            H    E+E G+ G    L HRD P
Sbjct: 1082 HSLAVELEHGAAGLRLCLHHRDLP 1105


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 314 GTRPARVPRPHHPQLPKPDPERP 246
           G R  RV R H+ +   P+ +RP
Sbjct: 1   GPRTRRVKRSHNGKNGSPEEKRP 23


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +2

Query: 302 LDAYHCVISFTANHMYVTSSVFTSA----HGWQPVDIVDC 409
           + +  C++  +   + V  + +T      H W P DI++C
Sbjct: 134 MPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPYDILNC 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,589
Number of Sequences: 438
Number of extensions: 2029
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)