Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0098.Seq
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    31   0.33 
At1g63480.1 68414.m07178 DNA-binding family protein contains a A...    29   1.00 
At2g13800.1 68415.m01523 leucine-rich repeat family protein / pr...    29   1.3  
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain...    27   7.0  
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea...    27   7.0  
At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger) fa...    26   9.3  
At1g63470.1 68414.m07177 DNA-binding family protein contains a A...    26   9.3  

>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 365 THSMLRTCDLQ*N**HSGTRPARV--PRPHHPQLPKPDPERPYILNKTFRKSHSNISKRS 192
           TH  +R  DLQ N   S T+  R   P P  P  P P P +P I     RK  +   ++S
Sbjct: 270 THRSVRNRDLQENAKRSETKFKRTFQPPPSPPPPPPPPPPQPLIAATPPRKQGTLQRRKS 329

Query: 191 N 189
           N
Sbjct: 330 N 330


>At1g63480.1 68414.m07178 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 361

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 320 HSGTRPARVPRPHHPQLPKPDP 255
           H+G RP   P  HHPQ   P P
Sbjct: 41  HTGLRPMSNPNIHHPQANNPGP 62


>At2g13800.1 68415.m01523 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 601

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 394 NRLPTVSAREHTRC-YVHVICSKTDNTVVRVQPGCRDLTTPSYPSLTQSVLTY*IKHFEN 218
           N L + +A   T C + HV C+ T+N+V R+  G  +L+    P L Q      ++ F N
Sbjct: 46  NILQSWNATHVTPCSWFHVTCN-TENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNN 104

Query: 217 HI 212
           +I
Sbjct: 105 NI 106


>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
           protein-related / RhoGAP domain-containing protein
           contains Pfam domain, PF00620: RhoGAP domain
          Length = 902

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 101 LRYFLRTIPMSKAPASATTA 42
           L+YFLR +P S  PAS   A
Sbjct: 279 LKYFLRELPSSPVPASCCNA 298


>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat domain 4 protein (GI:9955698) [Mus
           musculus]
          Length = 427

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 246 RTLWVRLG*LGVVRSRHPGWTRTTVLSVL 332
           R LW+  G   +  S HPG++R  V+S L
Sbjct: 326 RLLWMVSGASNLPGSNHPGFSRVRVISCL 354


>At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger)
           family protein 
          Length = 630

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 355 CYVHVICSKTDNTVVRVQP--GCRDLTTPSYPSLTQS 251
           C     C ++++ V   +P  G  D T P+ PSLTQ+
Sbjct: 475 CISSSYCPRSNHIVASYRPRVGSSDDTVPTQPSLTQT 511


>At1g63470.1 68414.m07177 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 378

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 314 GTRPARVPRPHHPQLPKPDP 255
           G RP   P  HHPQ   P P
Sbjct: 43  GMRPMSNPNIHHPQASNPGP 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,615,433
Number of Sequences: 28952
Number of extensions: 162266
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)