Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0097.Seq
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4RJJ1 Cluster: Chromosome 3 SCAF15037, whole genome sh...    35   1.8  
UniRef50_A5PMH0 Cluster: Ataxin 7-like 2; n=3; Danio rerio|Rep: ...    33   7.1  
UniRef50_UPI00005C00AB Cluster: PREDICTED: hypothetical protein;...    33   9.4  
UniRef50_A7NII6 Cluster: Ribonuclease H; n=2; Chloroflexaceae|Re...    33   9.4  

>UniRef50_Q4RJJ1 Cluster: Chromosome 3 SCAF15037, whole genome shotgun
            sequence; n=2; Tetraodontidae|Rep: Chromosome 3
            SCAF15037, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1594

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 284  HHPQPXKPDPERPYILNKTFRKS 216
            HHPQP KP P+RP+ + +T   S
Sbjct: 1080 HHPQPTKPSPQRPHSIQQTHHHS 1102


>UniRef50_A5PMH0 Cluster: Ataxin 7-like 2; n=3; Danio rerio|Rep:
           Ataxin 7-like 2 - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 666

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 320 HSGTRPARVPRPHHPQPXKPDPER 249
           H G  P RVP PH P   +P P+R
Sbjct: 143 HQGAGPPRVPPPHPPHQGRPKPQR 166


>UniRef50_UPI00005C00AB Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 291

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 308 RPARVPRPHHPQPXKPDPERPYILNK 231
           R  R P P HP+P +P+P  P + N+
Sbjct: 150 RRRRAPEPRHPEPWRPNPTNPNLENE 175


>UniRef50_A7NII6 Cluster: Ribonuclease H; n=2; Chloroflexaceae|Rep:
           Ribonuclease H - Roseiflexus castenholzii DSM 13941
          Length = 245

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3

Query: 27  FEIEMGSGGAGWSLAHRDRPQEIS 98
           F+ E GSGG G  L HRDR +EIS
Sbjct: 104 FDSESGSGGYGVILKHRDRTKEIS 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,149,071
Number of Sequences: 1657284
Number of extensions: 12315201
Number of successful extensions: 34917
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34731
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)